New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1524974	47 (0.760)	6 (0.100)	4/250	NT	11.6%	coding (606/1449 nt)	murC	UDP‑N‑acetylmuramate‑‑L‑alanine ligase
	?	NC_002947	= 1524995	47 (0.810)					coding (627/1449 nt)	murC	UDP‑N‑acetylmuramate‑‑L‑alanine ligase

ACCGCTGCCGGTACCAATGCGCAGCTGGGCACCAGCCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1524828‑1524974 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaaggtTTTCTTCAGCTTGTTGAAGTCACCTTCGTAGGTCGCCATGTGGTCGGCGTCGATGTTGGTGACAACCGCGACCATCGGCTGCAGGTGCAGGAAGCTGGCATCGCTTTCGTCTGCTTCAGCGATCAGGTAGCGGCTGGTGCCCAGCTGC  <  NC_002947/1524995‑1524848                                                                                                                                                                                                                                                                                                         ACCGCTGCCGGTACCAATGCGCAGCTGGGCACCAGCCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGT                                                                                                                                                      <  8:48367/147‑1                     GCAGCTGGGCACCAGCCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGTTTTCTTCAGCTTGTTGAAGTCA                                                                                                                                >  5:163212/1‑149                              CACCAGCCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGTTTTCTTCAGCTTGTTGAAGTCACCTTCGTAG                                                                                                                       <  7:233624/149‑1                              CACCAGCCGCTACCTGATCGCGGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGTTTTCTTCAGCTTGTTGAAGTCACCTTCGTAG                                                                                                                       <  8:325053/149‑1                                    CCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGTTTTCTTCAGCTTGTTGAAGTCACCTTCGTAGGTCGCC                                                                                                                 <  6:163212/149‑1                                    CCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGTTTTCTTCAGCTTGTTGAAGTCACCTTCGTAG                                                                                                                       >  5:64989/1‑143                                    CCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGTTTTCTTCAGCTTGTTGAAGTCACCTTCGTAG                                                                                                                       <  6:64989/143‑1                                                                                                                                              GAAGGTTTTCTTCAGCTTGTTGAAGTCACCTTCGTAGGTCGCCATGTGGTCGGCGTCGATGTTGGTGACAACCGCGACCATCGGCTGCAGGTGCAGGAAGCTGGCATCGCTTTCGTCTGCTTCAGCGATCAGGTAGTGGCTGGTGCCCA       <  2:385272/149‑1                                                                                                                                                   TTTTCTTCAGCTTGTTGAAGTCACCTTCGTAGGTCGCCATGTGGTCGGCGTCGATGTTGGTGACAACCGCGACCATCGGCTGCAGGTGCAGGAAGCTGGCATCGCTTTCGTCTGCTTCAGCGATCAGGTAGCGGCTGGTGCCCAGCTGC  >  2:377351/1‑149                                                                                                                                                                                                                                                                                                         ACCGCTGCCGGTACCAATGCGCAGCTGGGCACCAGCCGCTACCTGATCGCTGAAGCAGACGAAAGCGATGCCAGCTTCCTGCACCTGCAGCCGATGGTCGCGGTTGTCACCAACATCGACGCCGACCACATGGCGACCTACGAAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1524828‑1524974 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgaaggtTTTCTTCAGCTTGTTGAAGTCACCTTCGTAGGTCGCCATGTGGTCGGCGTCGATGTTGGTGACAACCGCGACCATCGGCTGCAGGTGCAGGAAGCTGGCATCGCTTTCGTCTGCTTCAGCGATCAGGTAGCGGCTGGTGCCCAGCTGC  <  NC_002947/1524995‑1524848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.