| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1934858 = | 62 (1.000) | 5 (0.080) | 5/256 | NT | 7.3% | coding (123/936 nt) | htrB | lipid A biosynthesis lauroyl acyltransferase |
| ? | NC_002947 | 1934915 = | 68 (1.140) | coding (180/936 nt) | htrB | lipid A biosynthesis lauroyl acyltransferase | |||||
GAAGAAGGCGATGCCGGTAGAGGCGAAGTTGGCCTTGAGCAAACGCTGCCGTTCGTCGACCGACAGCTCCGGGAAGCACAGCTCCAGGTTGCGCGCGGCGATGCGCCGACG‑TTCACCGGCAAAGCGATACATGACGGCGC‑‑C‑CAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1935005‑1934858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTTCTTCGAAATGGCCATGAGCTGGTGGTGGCCCAAGGCCAGGCTGGCGCGCCTGGCCCATAT > NC_002947/1934915‑1935061 GAAGAAGGCGATGCCGGTAGAGGCGAAGTTGGCCTTGAGCAAACGCTGCCGTTCGTCGACCGACAGCTCCGGGAAGCACAGCTCCAGGTTGCGCGCGGCGATGCGCCGACGCTTCACCGGCAAAGCGATACATGACGGCGC‑‑C‑CAGCGC < 1:259368/148‑1GAAGAAGGCGATGCCGGTAGAGGCGAAGTTGGCCTTGAGCAAACGCTGCCGTTCGTCGACCGACAGCTCCGGGAAGCACAGCTCCAGGTTGCGCGCGGCGATGCGCCGACG‑TTCACCGGCAAAGCGATACATGACGGCGC‑‑C‑CAGCGCG < 7:212934/148‑1 CCAGGTTGCGCGCGGCGATGCGCCGACG‑TTCACCGGCAAAGCGATACATGACGGCGC‑‑C‑CAGCGCGCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGC > 4:117761/1‑149 GGTTGCGCGCGGCGATGCGCCGACG‑TTCACCGGCAAAGCGATACATGACGGCGC‑‑C‑CAGCGCGCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTT > 3:306598/1‑149 GTTGCGCGCGGCGATGCGCCGACG‑TTCACCGGCAAAGCGATACATGACGGCGC‑‑C‑CAGCGCGCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTTC > 4:151259/1‑149 CGATGCGCCGACG‑TTCACCGGCAAAGCGATACATGACGGCGCATCGCCGCGCGCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTTCTTCGAAAT > 4:100360/1‑149 AAGCGATACATGACGGCGC‑‑C‑CAGCGCGCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTTCTTCGAAATGGCCATGAGCTGGTGGTGGCCCAAGG < 3:117761/149‑1 C‑‑C‑CAGCGCGCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTTCTTCGAAATGGCCATGAGCTGGTGGTGGCCCAAGGCCAGGCTGGCGCGCCTGG < 4:306598/149‑1 CGCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTTCTTCGAAATGGCCATGAGCTGGTGGTGTCCCAAGGCCAGGCTGGCGCGCCTGGCCCATAT < 3:151259/149‑1 GAAGAAGGCGATGCCGGTAGAGGCGAAGTTGGCCTTGAGCAAACGCTGCCGTTCGTCGACCGACAGCTCCGGGAAGCACAGCTCCAGGTTGCGCGCGGCGATGCGCCGACG‑TTCACCGGCAAAGCGATACATGACGGCGC‑‑C‑CAGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1935005‑1934858‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgCAACCTGGAGCTGTGCTTCCCGGAGCTGTCGGTCGACGAACGGCAGCGTTTGCTCAAGGCCAACTTCGCCTCTACCGGCATCGCCTTCTTCGAAATGGCCATGAGCTGGTGGTGGCCCAAGGCCAGGCTGGCGCGCCTGGCCCATAT > NC_002947/1934915‑1935061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |