New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2069173	78 (1.260)	4 (0.070)	3/244	NT	5.0%	intergenic (+20/‑454)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase
	?	NC_002947	= 2069185	80 (1.410)					intergenic (+32/‑442)	PP_t19/PP_1846	tRNA‑Ser/group II intron‑encoding maturase

ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2069019‑2069173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcccccgTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGCCT  <  NC_002947/2069185‑2069040                                                                                                                                                                                                                                                                                                               ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAA                                                                                                                                                           <  7:314854/148‑1  CTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACCAGAAGTCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGC                                                                                                                                                         >  7:203894/1‑149      ATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCACTTCTTAACCGCCACATTCTAAGAAAAGCACCC                                                                                                                                                     >  1:69657/1‑149                         CCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACAAAAAGCCCCCGTACTTTTCAGCGCGGGGG                                                                                                                                  <  2:335826/149‑1                                                                                                                                   CGCCACATTCTACGAAAAGCCCCCGCGCTGAAAAGTACGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGACTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGT                        >  8:203894/1‑149                                                                                                                                    GCCACATTCTACGAAAAGCCCCCGTACTTTTCAGCGCGGGGG                                                                                                                                  >  5:17746/1‑42                                                                                                                                    GCCACATTCTACGAAAAGCCCCCGTACTTTTCAGCGCGGGGG                                                                                                                                  <  6:17746/42‑1                                                                                                                                                 AAAAGCCCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCT          >  7:189615/1‑149                                                                                                                                                    AGCCCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTGACCGTTTCTCTTCAAGCCTTGC       <  7:59462/149‑1                                                                                                                                                    AGCCCACGTACTTTTCAGCGCGGGGTCTTTTCGTAGAATGTGGCGGTGAAGAAGTGATTTGAACCCTTGATACGATTTCTCGTATACACAGTTTCCAGGCGTGCTCCTTCGAACACTGGGAGACTTCACCGTTTCTCTTCAAGCCTTGC       <  2:243805/149‑1                                                                                                                                                       CCCCTTACTTTTCAGCGCGGGGGCTTTTCGTAGACTGTGGCGGTGAAGAAGGGATATGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGC    <  8:260034/149‑1                                                                                                                                                       CCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGC    >  5:13062/1‑149                                                                                                                                                       CCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGC    <  8:163413/149‑1                                                                                                                                                       CCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGC    <  8:260028/149‑1                                                                                                                                                       CCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGT                                                                         >  4:341606/1‑80                                                                                                                                                       CCCCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGT                                                                         <  3:341606/80‑1                                                                                                                                                         CCGTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGCCT  <  8:182384/149‑1                                                                                                                                                                                                                                                                                                               ACTAAATTAGCGCACCTCGACAGGCCGCAAGGCTTGAAGAGAAACGGTGAAGTGTCCGAGTGGTCGAAGGAGCACGCCTGGAAAGTGTGTATACGAGAAATCGTATCAAGGGTTCAAATCCCTTCTTCACCGCCACATTCTACGAAAAGCCCCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2069019‑2069173 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcccccgTACTTTTCAGCGCGGGGGCTTTTCGTAGAATGTGGCGGTGAAGAAGGGATTTGAACCCTTGATACGATTTCTCGTATACACACTTTCCAGGCGTGCTCCTTCGACCACTCGGACACTTCACCGTTTCTCTTCAAGCCTTGCGGCCT  <  NC_002947/2069185‑2069040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.