New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2135715 =	60 (0.970)	3 (0.050)	3/250	NT	5.0%	coding (1036/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase
	?	NC_002947	2135757 =	57 (0.980)					coding (994/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase

TTCAAAGCCTACGACCCCGACCATCTGTTGGGCGAACAGGAGGAGCTCGGCATCAGCCTGGCCCTGATCCCCACCGACACGCCCGGCGTCGAGATCGGCAAACGCCACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2135865‑2135715 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggcaGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAAGGCCAGGCCCAGCAGGGTGGCGACCGGGCCGAGGGTGAT  >  NC_002947/2135757‑2135904                                                                                                                                                                                                                                                                                                             TTCAAAGCCTACGACCCCGACCATCTGTTGGGCGAACAGGAGGAGCTCGGCATCAGCCTGGCCCTGATCCCCACCGACACGCCCGGCGTCGAGATCGGCAAACGCCACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGG                                                                                                                                                        >  5:291345/1‑149   CAAAGCCTACGACCCCGACCATCTGTTGGGCGAACAGGAGGAGCTCGGCATCAGCCTGGCCCTGATCCCCACCGACACGCCCGGCGTCGAGATCGGCAAACGCCACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGC                                                                                                                                                       <  6:74807/148‑1   CAAAGCCTACGACCCCGACCATCTGTTGGGCGAACAGGAGGAGCTCGGCATCAGCCTGGCCCTGATCCCCACCGACACGCCCGGCGTCGAGATCGGCAAACGCCACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGC                                                                                                                                                       >  7:22377/1‑148    AAAGCCTACGACCCCGACCATCTGTTGGGCGAACAGGAGGAGCTCGGCATCAGCCTGGCCCTGATCCCCACCGACACGCCCGGCGTCGAGATCGGCAAACGCCACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGCA                                                                                                                                                      >  5:168399/1‑148                                                                                                          CACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGCAGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTC                                                                                <  1:178677/116‑1                                                                                                          CACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGCAGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTC                                                                                >  2:178677/1‑116                                                                                                                CCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGCAGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAA                                         <  3:108280/149‑1                                                                                                                                                CAGCGGCAGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAAGGCCAGGCCCAGCAGGGTGGCGACCGGGCCGA         <  6:250008/149‑1                                                                                                                                                CAGCGGCAGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAAGGCCAGGCCCAGCAGGGTGGCGACCGGGCC           >  2:236772/1‑147                                                                                                                                                     GCAGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAAGGCCAGGCCCAGCAGGGTGGCGACCGGGCCGAGGGTG    >  2:274107/1‑149                                                                                                                                                      CAGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGATGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAAGGCCAGGCCCAGCAGGGTGGCGACCGGGCCGAGGGTGA   >  1:69279/1‑149                                                                                                                                                       AGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAAGGCCAGGCCCAGCAGGGTGGCGACCGGGCCGAGGGTGAT  <  7:155102/149‑1                                                                                                                                                                                                                                                                                                             TTCAAAGCCTACGACCCCGACCATCTGTTGGGCGAACAGGAGGAGCTCGGCATCAGCCTGGCCCTGATCCCCACCGACACGCCCGGCGTCGAGATCGGCAAACGCCACCTGCCGCTGGGCGCCGCCTTCATGAACGGCCCCAACAGCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2135865‑2135715 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcggcaGGTGGCGTTTGCCGATCTCGACGCCGGGCGTGTCGGTGGGGATCAGGGCCAGGCTGATGCCGAGCTCCTCCTGTTCGCCCAACAGATGGTCGGGGTCGTAGGCTTTGAAGGCCAGGCCCAGCAGGGTGGCGACCGGGCCGAGGGTGAT  >  NC_002947/2135757‑2135904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.