New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2295798	46 (0.740)	5 (0.100)	5/218	NT	12.0%	intergenic (+44/+89)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein
	?	NC_002947	= 2295835	36 (0.710)					intergenic (+81/+52)	PP_5496/PP_2023	hypothetical protein/glutathione S‑transferase family protein

GGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2295628‑2295798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGCTCGGT  <  NC_002947/2295835‑2295689                                                                                                                                                                                                                                                                                                                                 GGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTG                                                                                                                                                                           <  5:305553/149‑1  GTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCTCCACTGATCTGGCTTGTGTG‑AGGTCCTTGT                                                                                                                                                                          <  1:32592/149‑1  GTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGT                                                                                                                                                                          >  1:339202/1‑149     GTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGG                                                                                                                                                                        <  4:106144/148‑1      TACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGA                                                                                                                                                                      <  3:284136/149‑1         TGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCG                                                                                                                                                                   >  3:109094/1‑149            CAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGC                                                                                                                                                                <  2:259938/149‑1            CAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGG                                                                                                                                                                 >  3:9314/1‑148              GCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCAT                                                                                                                                                              <  2:340704/149‑1                        ATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCATGCCCGCGAA                                                                                                                                                     >  2:61935/1‑148                                                 CACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGG                                                                                                                           >  3:122586/1‑149                                                                       gACCTGCGCCAGACCCCCAATTTCCATGCGGCCCTGCGTGGCAAGCCCCACCACTTATCGGGC‑TGTGGGTAGGTCCTTGTGGGAGCGGGCATGCCCGCGAAGGGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCAT                                                                                                     <  4:122586/148‑1                                                                                        CAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGG                                                                                                         >  3:227736/1‑128                                                                                                                          CACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGG                                                                                                        >  1:122992/1‑95                                                                                                                          CACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGG                                                                                                        <  2:122992/95‑1                                                                                                                                                      GTGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGC                        >  6:372196/1‑148                                                                                                                                                       TGGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTC                      >  8:12607/1‑149                                                                                                                                                        GGGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCT                     <  2:80183/149‑1                                                                                                                                                         ccAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACAGGCTCTGCCGGTGTTCGCCCGCATGCCCGCTCCCACAAGGACCTCCCACAACCCACATCAGTCGTGGTGCATGCCACGCAGGGCCGCAAGGAAATTCGCGCTCag                    >  2:161241/3‑147                                                                                                                                                         GGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTG                    >  4:76435/1‑149                                                                                                                                                         GGAGCGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCT                     <  2:74833/148‑1                                                                                                                                                             CGGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGC                <  8:11788/149‑1                                                                                                                                                              gggctgGCCCGCGATGCGGGCACCGCGGTGGAGGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCA               <  4:345755/143‑1                                                                                                                                                              GGGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCA               <  3:76435/149‑1                                                                                                                                                               GGCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCCCACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAG              >  5:333391/1‑149                                                                                                                                                                GCATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGG             <  1:20686/149‑1                                                                                                                                                                 CATGCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGG             >  8:182538/1‑148                                                                                                                                                                    GCCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCCTGCCCGCTCCCACAAGGCCCTCACACAAGCCAGATCAGTGG                                                             >  3:326399/1‑97                                                                                                                                                                     CCCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCT                     >  3:118258/1‑136                                                                                                                                                                      CCGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGC       >  4:109094/1‑149                                                                                                                                                                       CGCGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGCT      >  6:149935/1‑149                                                                                                                                                                         cgtAGCGGGCACCGCGGTGGAGGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGCTCG    <  4:248368/146‑1                                                                                                                                                                         CGAAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGCTCG    <  6:378694/149‑1                                                                                                                                                                           AAGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCTGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGCTCGGT  <  5:200020/149‑1                                                                                                                                                                            AGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGCTCGG   <  3:316720/147‑1                                                                                                                                                                                                                                                                                                                                 GGTCGTACTGCCAGCGCATGCCCATGCCGACAGCAGCAAGGCTTCTGCCACCCACAGCTACACCGAGCAGTACCTGCGCCAGAGCGCCAATTTCCATGCGGCCCTGAGTGGCAAGCACCACCACTGATCTGGCTTGTGTG‑AGGTCCTTGTGGGAGCGGGCATGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2295628‑2295798 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcgggcatgcccgcgaaGCGGGCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAAGGACCTCACACAAGCCAGATCAGTGGTGGTGCTTGCCACTCAGGGCCGCATGGAAATTGGCGCTCTGGCGCAGGTACTGCTCGGT  <  NC_002947/2295835‑2295689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.