New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3249454	47 (0.760)	3 (0.050)	3/254	NT	5.7%	coding (1074/1704 nt)	ureC	urease subunit alpha
	?	NC_002947	= 3249483	55 (0.930)					coding (1103/1704 nt)	ureC	urease subunit alpha

CACCGTGGACGAGCACCTGGACATGCTCATGGTCTGTCACCACCTGGACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGACCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3249301‑3249454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctcgCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCCCATGTCGTGGAGGATGTCCTCGGCAGCGATGGTTTCGCGGCGAATGCGTGACTCGGCGAAGGCCACGTCCTCGGCGATGCTCGGGTCCAGGTGGT  <  NC_002947/3249483‑3249339                                                                                                                                                                                                                                                                                                             CACCGTGGACGAGCACCTGGACATGCTCATGGTCTGTCACCACCTGGACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGA                                                                                                                                                        >  6:282884/1‑149  ACCGTGGACGAGCACCTGGACATGCTCATGGTCTGTCACCACCTGGACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGAC                                                                                                                                                       >  2:72879/1‑149                         GCTCATGGTCTGTCACCACCTGGACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGACCTC                                                                                                                                                    <  7:81713/129‑1                         GCTCATGGTCTGTCACCACCTGGACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGACCTC                                                                                                                                                    >  8:81713/1‑129                                       ACCACCTGGACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAG                                                                                                                  <  7:12605/149‑1                                           CCTGGACCCGAGCATCGCCGAGGACGGGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCA                                                                                                              <  5:169967/149‑1                                               GACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGACCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATG                                                                                                            <  3:342031/147‑1                                                                                                                                                      CCTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCCCATGTCGTGGAGGATGTCCTCGGCAGCGATGGTTTCGCGGCGAATGCGTGACTCGGCGAAGGCCACGTCCTCGGCGATGCTCGGGTCCAGGTGG   >  1:32682/1‑149                                                                                                                                                       CTCGCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCCCATGTCGTGGAGGATGTCCTCGGCAGCGATGGTTTCGCGGCGAATGCGTGACTCGGCGAAGGCCATGTCCTCGGCGATGCTCGGGTCCAGGTGGT  <  8:49585/149‑1                                                                                                                                                                                                                                                                                                             CACCGTGGACGAGCACCTGGACATGCTCATGGTCTGTCACCACCTGGACCCGAGCATCGCCGAGGACGTGGCCTTCGCCGAGTCACGCATTCGCCGCGAAACCATCGCTGCCGAGGACATCCTCCACGACATGGGCGCCTTTGCCATGACCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3249301‑3249454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctcgCCAACCCGGCCCATGGCCTGGGAGTCGGACGAGGTCATGGCAAAGGCGCCCATGTCGTGGAGGATGTCCTCGGCAGCGATGGTTTCGCGGCGAATGCGTGACTCGGCGAAGGCCACGTCCTCGGCGATGCTCGGGTCCAGGTGGT  <  NC_002947/3249483‑3249339

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.