New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3383060 =	70 (1.130)	4 (0.070)	4/254	NT	5.6%	coding (179/312 nt)	PP_5546	hypothetical protein
	?	NC_002947	3383098 =	67 (1.130)					coding (217/312 nt)	PP_5546	hypothetical protein

TTCCCTAATCGACACCTATTGCGTTAGCCCTAGAAGGTTCGCTGCGCGGGCACCGCTTAAAGCGATTACCTGATGGCTTTTCGAAGCTATCGCACTAATGACCTTCTCCGTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3383208‑3383060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGGAAGTATTTGTTACCGGCGGACGGCCGAGAACCCTGCAGT  >  NC_002947/3383098‑3383245                                                                                                                                                                                                                                                                                                           TTCCCTAATCGACACCTATTGCGTTAGCCCTAGAAGGTTCGCTGCGCGGGCACCGCTTAAAGCGATTACCTGATGGCTTTTCGAAGCTATCGCACTAATGACCTTCTCCGTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGCG                                                                                                                                                      >  2:99332/1‑149                      CGTTAGCCCTAGAAGGTTCGCTGCGCGGGCACCGCTTAAAGCGATTACCTGATGGCTTTTCGAAGCTATCGCACTAATGACCTTCTCCGTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGC                                                                                                                                                       <  1:61324/127‑1                      CGTTAGCCCTAGAAGGTTCGCTGCGCGGGCACCGCTTAAAGCGATTACCTGATGGCTTTTCGAAGCTATCGCACTAATGACCTTCTCCGTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGC                                                                                                                                                       >  2:61324/1‑127                                                                                                            CCGTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAG                                           >  7:78145/1‑149                                                                                                              GTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAAC                                                             >  5:191165/1‑129                                                                                                              GTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAAC                                                             <  6:191165/129‑1                                                                                                               TCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGG                                         >  1:3266/1‑148                                                                                                                                                 CGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGGAAGTATTTGTTACCGGCGGACGGCCGAGAACCCTG      <  3:25124/149‑1                                                                                                                                                     GACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGGAAGTATTTGATACCGGCGGACGGCCGAGAACCCTGCAGT  >  1:330678/1‑149                                                                                                                                                                                                                                                                                                           TTCCCTAATCGACACCTATTGCGTTAGCCCTAGAAGGTTCGCTGCGCGGGCACCGCTTAAAGCGATTACCTGATGGCTTTTCGAAGCTATCGCACTAATGACCTTCTCCGTCGCCGGCGCACGTTTGCCGAAGCGCCCAGTGACCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3383208‑3383060 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcgACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGGAAGTATTTGTTACCGGCGGACGGCCGAGAACCCTGCAGT  >  NC_002947/3383098‑3383245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.