New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3383060 =70 (1.130)4 (0.070) 4/254 NT 5.6% coding (179/312 nt) PP_5546 hypothetical protein
?NC_002947 3383098 = 67 (1.130)coding (217/312 nt) PP_5546 hypothetical protein

GTCGAACACTGCAGGCTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGGAA  >  NC_002947/3382912‑3383208
                                                                                                                                                    |                                                                                                                                                    
actgcagggttctcggccgtccgccggtatcaaatacttccctaatcgacacctattgcgttagccctagaaggttcgctgcgcgggcaccgcttaaagcgattacctgatggcttttcgaagctatcgcactaatgaccttctccgtc                                                                                                                                                      >  1:330678‑M1/149‑149 (MQ=255)
    cagggttctcggccgtccgccggtaacaaatacttccctaatcgacacctattgcgttagccctagaaggttcgctgcgcgggcaccgcttaaagcgattacctgatggcttttcgaagctatcgcactaatgaccttctccgtCGCCg                                                                                                                                                  <  3:25124‑M1/5‑1 (MQ=255)
       acTGCAGGCTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGt                                                                                                                                                >  1:25177/1‑148 (MQ=255)
        cTGCAGGCTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCa                                                                                                                                              >  2:102760/1‑149 (MQ=255)
         tGCAGGCTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGcccagtga                                                                                                                                             >  6:20441/1‑143 (MQ=255)
         tGCAGGCTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCAc                                                                                                                                             >  8:219932/1‑149 (MQ=255)
           cAGGCTTCTCCCTGAAGGAGGCATTCTTGCACCAATCGAATTCCTTCATTTGGCTACCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTg                                                                                                                                           <  8:227890/149‑1 (MQ=255)
               cTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGcc                                                                                                                                                   <  3:275570/137‑1 (MQ=255)
               cTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGcc                                                                                                                                                   >  4:275570/1‑137 (MQ=255)
                  ctcCCTGAAGGAGGCATTCTTGCACCAAACGAATTCATTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGgcgc                                                                                                                                      <  5:255939/147‑1 (MQ=255)
                     ccTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCgg                                                                                                                                 >  3:360859/1‑149 (MQ=255)
                     ccTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCgg                                                                                                                                 <  7:61406/149‑1 (MQ=255)
                                  ttCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCg                                                                                                                    >  8:340945/1‑149 (MQ=255)
                                     ttGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTg                                                                                                                                           >  5:92534/1‑123 (MQ=255)
                                     ttGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTg                                                                                                                                           <  6:92534/123‑1 (MQ=255)
                                       ccctaatcgacacctattgcgttagccctagaaggttcgctgcgcgggcaccgcttaaagcgattacctgatggcttttcgaagctatcgcactaatgaccttctccgtCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGa                                                                                                                >  1:3266‑M1/110‑148 (MQ=255)
                                         ctaatcgacacctattgcgttagccctagaaggttcgctgcgcgggcaccgcttaaagcgattacctgatggcttttcgaagctatcgcactaatgaccttctccgtCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACgg                                                                                                             >  7:78145‑M1/108‑149 (MQ=255)
                                         aCCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACgg                                                                                                             <  4:360859/149‑1 (MQ=255)
                                         aCCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACg                                                                                                              >  2:13974/1‑148 (MQ=255)
                                            aaaCGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGgag                                                                                                           >  7:156677/1‑148 (MQ=255)
                                            aaaCGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGgag                                                                                                           >  1:99332/1‑148 (MQ=255)
                                                gAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGTGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTggg                                                                                                                                         >  4:47071/1‑114 (MQ=255)
                                                gAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGTGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTggg                                                                                                                                         <  3:47071/114‑1 (MQ=255)
                                                gAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGt                                                                                                      >  8:49942/1‑149 (MQ=255)
                                                   ttCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCAt                                                                                                   >  5:69413/1‑149 (MQ=255)
                                                   ttCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCAt                                                                                                   >  7:239239/1‑149 (MQ=255)
                                                      cTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAACATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAg                                                                                                >  1:46572/1‑149 (MQ=255)
                                                       ttCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGt                                                                                               >  7:268398/1‑149 (MQ=255)
                                                         cATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTg                                                                                              <  5:19741/148‑1 (MQ=255)
                                                          atgtGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCg                                                                                            <  8:268398/146‑1 (MQ=255)
                                                           gttagccctagaaggttcgctgcgcgggcaccgcttaaagcgattacctgatggcttttcgaagctatcgcactaatgaccttctccgtCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGAc                                                                                                               <  6:191165‑M1/40‑1 (MQ=255)
                                                           gttagccctagaaggttcgctgcgcgggcaccgcttaaagcgattacctgatggcttttcgaagctatcgcactaatgaccttctccgtCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGAc                                                                                                               >  5:191165‑M1/90‑129 (MQ=255)
                                                              ggCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATa                                                                                         <  7:49942/148‑1 (MQ=255)
                                                                cTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCt                                                                                      >  1:180271/1‑149 (MQ=255)
                                                                 tAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGTAGGGGAGTTGATGCGAATCTCACGTGGCCTCTAAGTGGCGCCGGTCACTGGGCGCTTAGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCtt                                                                                     >  4:301378/1‑149 (MQ=255)
                                                                 tAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCtt                                                                                     >  7:342145/1‑149 (MQ=255)
                                                                   gCCGCGCAGCGGTGGACCATGCATTCTCTCGATTAGGCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTAGGTGGGGGCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCg                                                                                   <  2:8751/149‑1 (MQ=255)
                                                                   gCCGCGCAGCGGTGGACCAAGCATTCTCTCGACTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGGCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCtt                                                                                     <  6:95673/147‑1 (MQ=255)
                                                                       cgcAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCTGCAAACGTGCGCCGACGACGGAGAAGGTCATTAGTGCGATAGCTTCGaaaa                                                                               <  3:344327/149‑1 (MQ=255)
                                                                           gCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCa                                                                           <  1:102760/149‑1 (MQ=255)
                                                                            cGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCa                                                                           >  8:154710/1‑148 (MQ=255)
                                                                               tGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAg                                                                       >  1:50661/1‑149 (MQ=255)
                                                                               tGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAg                                                                       <  8:342145/149‑1 (MQ=255)
                                                                                ggACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCa                                                                        <  2:239413/147‑1 (MQ=255)
                                                                                ggACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCa                                                                        >  1:239413/1‑147 (MQ=255)
                                                                                ggACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAgg                                                                      <  4:365218/149‑1 (MQ=255)
                                                                                    cAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAAt                                                                  >  8:99520/1‑149 (MQ=255)
                                                                                      aGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGc                                                                             >  3:207457/1‑136 (MQ=255)
                                                                                      aGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGc                                                                             <  4:207457/136‑1 (MQ=255)
                                                                                         aTTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCtt                                                             <  2:180271/149‑1 (MQ=255)
                                                                                             tctcGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAg                                                         >  7:51638/1‑149 (MQ=255)
                                                                                             tctcGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAg                                                         >  6:304778/1‑149 (MQ=255)
                                                                                               tcGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCAAGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCg                                                       >  3:216124/1‑149 (MQ=255)
                                                                                                 gATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGc                                                                             <  5:36078/125‑1 (MQ=255)
                                                                                                 gATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGc                                                                             >  6:36078/1‑125 (MQ=255)
                                                                                                 gATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTaa                                                          >  4:5920/1‑144 (MQ=255)
                                                                                                 gATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTaa                                                          <  3:5920/144‑1 (MQ=255)
                                                                                                 gATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCg                                                       <  1:13974/147‑1 (MQ=255)
                                                                                                 gATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGt                                                     <  5:24076/149‑1 (MQ=255)
                                                                                                 gATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGt                                                     <  2:25177/149‑1 (MQ=255)
                                                                                                   ttAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGc                                                   >  5:152317/1‑149 (MQ=255)
                                                                                                       ccAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCcgc                                               >  2:148393/1‑149 (MQ=255)
                                                                                                       ccAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCcgc                                               >  4:156066/1‑149 (MQ=255)
                                                                                                       ccAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCcgc                                               <  2:348746/149‑1 (MQ=255)
                                                                                                           aggaggGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAg                                           <  7:99520/149‑1 (MQ=255)
                                                                                                               ggtgAGTTGATGCGAATCTCAAGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGaa                                       <  4:216124/146‑1 (MQ=255)
                                                                                                                gggAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAAc                                      >  4:25124/1‑149 (MQ=255)
                                                                                                                  gAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGAt                                                                                          >  5:371486/1‑95 (MQ=255)
                                                                                                                  gAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGAt                                                                                          <  6:371486/95‑1 (MQ=255)
                                                                                                                     ttGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTc                                  >  6:178626/1‑148 (MQ=255)
                                                                                                                         tGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAggg                             <  7:154710/149‑1 (MQ=255)
                                                                                                                          gCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGc                            >  6:337765/1‑149 (MQ=255)
                                                                                                                               tctcACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGTGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACg                       >  3:201077/1‑149 (MQ=255)
                                                                                                                                   aCGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCaa                    <  6:69413/148‑1 (MQ=255)
                                                                                                                                         ccTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATATgtgt             <  7:219932/149‑1 (MQ=255)
                                                                                                                                         ccTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGgtgt             <  8:51638/149‑1 (MQ=255)
                                                                                                                                          ctctATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTc            >  1:261630/1‑149 (MQ=255)
                                                                                                                                             tATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGt                                                     <  2:353228/105‑1 (MQ=255)
                                                                                                                                             tATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGt                                                     >  1:353228/1‑105 (MQ=255)
                                                                                                                                                 tgGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAgg     <  2:50661/149‑1 (MQ=255)
                                                                                                                                                    CGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGGaa  >  2:99332‑M1/1‑149 (MQ=255)
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GTCGAACACTGCAGGCTTCTCCCTGAAGGAGGCATTCTTGCACCAAACGAATTCCTTCATTTGGCTAGCCGCGCAGCGGTGGACCAAGCATTCTCTCGATTAGCCAAAGGAGGGGAGTTGATGCGAATCTCACGTGGCCTCTATGTGGCGCCGGTCACTGGGCGCTTCGGCAAACGTGCGCCGGCGACGGAGAAGGTCATTAGTGCGATAGCTTCGAAAAGCCATCAGGTAATCGCTTTAAGCGGTGCCCGCGCAGCGAACCTTCTAGGGCTAACGCAATAGGTGTCGATTAGGGAA  >  NC_002947/3382912‑3383208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.