| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3478423 | 52 (0.840) | 4 (0.070) | 4/254 | NT | 7.9% | coding (181/543 nt) | PP_3089 | hypothetical protein |
| ? | NC_002947 | = 3478457 | 44 (0.740) | coding (147/543 nt) | PP_3089 | hypothetical protein | |||||
GATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3478337‑3478423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCTGAGCGACTTCAAGATCCGCAAGGCAGTCGACAAGGCATCGGCCAAACTGTTCGAACACTGCTGCACCGGCAAGCACATCGCCAAGCTGAAGCTGAACGTGAACCGT < NC_002947/3478457‑3478310 GATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCT > 7:142973/1‑129GATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCT < 8:142973/129‑1 AGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGTCAACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCTGA < 6:155885/114‑1 AGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCTGA > 5:155885/1‑114 GCAACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCTGAGCGACTTCAAGATCCGCAAGGCAGTCGACAAGGCATCGGCCAAACTGTTCGAACACTGCTGCACCGGCAAGCACATCGCCAAGCTGAAGCTGAACGTGAA > 7:351701/1‑149 ACCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCTGAGCGACTTCAAGATCCGCAAGGCAGTCGACAAGGCATCGGCCAAACTGTTCGAACACTGCTGCACCGGCAAGCACATCGCCAAGCTGAAGCTGAACGTGAACCG > 7:62018/1‑149 CCGCCAGCTCCTCGGGCGGTGTGTCCTCCGAGCGCGTTGCCCTGAGCGACTTCAAGATCCGCAAGGCAGTCGACAAGGCATCGGCCAAACTGTTCGAACACTGCTGCACCGGCAAGCACATCGCCAAGCTGAAGCTGAACGTGAACCGT < 1:170782/149‑1 GATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3478337‑3478423‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcaacCGCCAGCTCCTCGGGCGGTGCGTCCTCCGAGCGCGTTGCCCTGAGCGACTTCAAGATCCGCAAGGCAGTCGACAAGGCATCGGCCAAACTGTTCGAACACTGCTGCACCGGCAAGCACATCGCCAAGCTGAAGCTGAACGTGAACCGT < NC_002947/3478457‑3478310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |