New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3478423	52 (0.840)	4 (0.070)	4/254	NT	7.9%	coding (181/543 nt)	PP_3089	hypothetical protein
	?	NC_002947	= 3478457	44 (0.740)					coding (147/543 nt)	PP_3089	hypothetical protein

CACGGTTCACGTTCAGCTTCAGCTTGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATTGTGAAACTCTCCATTAACAACATG  >  NC_002947/3478309‑3478604                                                                                                                                                     |                                                                                                                                                    cACGGGTCCCGTTCAGCTTCAGCTTGGCGCTGTGGTTGCCGGTGCAGCAGTGTTCGAACCGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCg                                                                                                                                                     <  2:347434/149‑1 (MQ=255)  aCGGTTCACGTTCAGCTTCAGCTTGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACACACCGCCCGAGGAGCTGGCGg                                                                                                                                                    <  1:170782‑M2/149‑2 (MQ=255)   cGGTTCACGTTCAGCTTCAGCTTGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGgt                                                                                                                                                   >  7:62018‑M2/1‑147 (MQ=255)      ttCACGTTCAGCTTCAGCTTGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGgttgc                                                                                                                                                >  7:351701‑M2/1‑144 (MQ=255)           gTTCAGCTTCAGCTTGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACg                                                                                                                                           >  5:162139/1‑149 (MQ=255)                 cttcagcttGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGa                                                                                                                                             <  4:355177/141‑1 (MQ=255)                 cttcagcttGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGa                                                                                                                                             >  3:355177/1‑141 (MQ=255)                    cagcttGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTg                                                                                                                                    <  6:298796/147‑1 (MQ=255)                     agcttGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTggg                                                                                                                                  <  3:330769/148‑1 (MQ=255)                     agcttGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGt                                                                                                                                 <  6:145668/149‑1 (MQ=255)                           gCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGcc                                                                                                                           <  5:272479/149‑1 (MQ=255)                             gATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGAGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGGCGTAGCCTGGGTGGCGCCg                                                                                                                          >  5:189483/1‑148 (MQ=255)                                       ccGGTGCAGCAGTGTTCGAACTGTTTCGCCGATCCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAg                                                                                                                 <  6:259863/147‑1 (MQ=255)                                       ccGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGc                                                                                                                <  2:252704/148‑1 (MQ=255)                                                 agTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCg                                                                                                     <  1:205793/149‑1 (MQ=255)                                                    gtTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATc                                                                                                  >  4:13716/1‑149 (MQ=255)                                                    gtTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATc                                                                                                  <  6:162139/149‑1 (MQ=255)                                                     ttCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATc                                                                                                  >  5:191600/1‑148 (MQ=255)                                                        gAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGt                                                                                              >  6:157089/1‑149 (MQ=255)                                                               ttGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTtgt                                                                                        <  6:289/148‑1 (MQ=255)                                                                     gATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTc                                                                                 <  3:151787/149‑1 (MQ=255)                                                                         ccTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATc                                                                              <  8:284886/148‑1 (MQ=255)                                                                          cTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCTCGTCGATGCAGTCCGTGTgttgttgagaca                                                                            >  4:303999/1‑143 (MQ=255)                                                                           ttGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAg                                                                           >  5:250036/1‑149 (MQ=255)                                                                           ttGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAg                                                                           >  1:353796/1‑149 (MQ=255)                                                                           ttGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAg                                                                           >  1:95549/1‑149 (MQ=255)                                                                             gTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAg                                                                           <  2:70269/147‑1 (MQ=255)                                                                                     ccTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTa                                                                         >  1:8192/1‑141 (MQ=255)                                                                                     ccTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTa                                                                         <  2:8192/141‑1 (MQ=255)                                                                                     ccTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCt                                                                 >  2:318896/1‑149 (MQ=255)                                                                                     ccTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCt                                                                 >  8:315955/1‑149 (MQ=255)                                                                                      cTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTg                                                                >  4:140283/1‑149 (MQ=255)                                                                                       ttGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTgg                                                               >  1:199052/1‑149 (MQ=255)                                                                                        tGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTc                                                                                 <  4:188921/130‑1 (MQ=255)                                                                                        tGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTc                                                                                 >  3:188921/1‑130 (MQ=255)                                                                                          cGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGa                                                             <  3:140283/148‑1 (MQ=255)                                                                                                        gCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTgg                                               <  6:191600/148‑1 (MQ=255)                                                                                                        gCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGa                                              >  4:158665/1‑149 (MQ=255)                                                                                                          tCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGgttgccctgagcgacttcaagatccgcaaggcagtcgacaaggcatcggccaaactgttcgaacactgct                                                                               >  5:155885‑M2/1‑44 (MQ=255)                                                                                                          tCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGgttgacctgagcgacttcaagatccgcaaggcagtcgacaaggcatcggccaaactgttcgaacactgct                                                                               <  6:155885‑M2/114‑71 (MQ=255)                                                                                                            aGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGgttgccctgagcgacttcaagatccgcaaggcagtcgacaaggcatcggccaaactgttcgaacactgctgcaccggcaagcacatc                                                              <  8:142973‑M2/129‑88 (MQ=255)                                                                                                            aGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGgttgccctgagcgacttcaagatccgcaaggcagtcgacaaggcatcggccaaactgttcgaacactgctgcaccggcaagcacatc                                                              >  7:142973‑M2/1‑42 (MQ=255)                                                                                                             gggCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATAc                                         >  1:379480/1‑149 (MQ=255)                                                                                                               gCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATAcgc                                       <  5:334331/149‑1 (MQ=255)                                                                                                               gCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATAcgc                                       <  2:353796/149‑1 (MQ=255)                                                                                                                 aaCGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGt                                     >  3:112113/1‑149 (MQ=255)                                                                                                                 aaCGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGt                                     >  3:106758/1‑149 (MQ=255)                                                                                                                      gcTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCTCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGa                                                             >  1:373332/1‑120 (MQ=255)                                                                                                                      gcTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCTCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGa                                                             <  2:373332/120‑1 (MQ=255)                                                                                                                           gaggaCGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCAt                           >  8:249599/1‑149 (MQ=255)                                                                                                                              gaCACACCGCCCTAGGAGGTGGCGGTTGGCGAAGTAGCCTGGGTGGAGCCGTACTCGTAGCCGAGGACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCTCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATtg                         <  2:170782/148‑1 (MQ=255)                                                                                                                               aCGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATtgtg                       <  3:13716/149‑1 (MQ=255)                                                                                                                                 gCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATTGTGaa                     <  3:158665/149‑1 (MQ=255)                                                                                                                                  cACCGACCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGTCTCCGTACTCGTAGCCCATCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATTGTGaaa                    <  5:248554/149‑1 (MQ=255)                                                                                                                                           aggagCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATTGTGAAACTCTCCAtt           <  3:303999/149‑1 (MQ=255)                                                                                                                                                     ggTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGAACCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATTGTGAAACTCTCCATTAACAACATg  >  6:376356/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CACGGTTCACGTTCAGCTTCAGCTTGGCGATGTGCTTGCCGGTGCAGCAGTGTTCGAACAGTTTGGCCGATGCCTTGTCGACTGCCTTGCGGATCTTGAAGTCGCTCAGGGCAACGCGCTCGGAGGACGCACCGCCCGAGGAGCTGGCGGTTGCCGACGTAGCCTGGGTGGCGCCGTACTCGTAGCCCAGCACTTCGATCCAGTCCTTGTGTTTTTCATCCAGTACTTCGCCTGGGATGCCGTCGATTTGGATATACGCGTCAAATGCCATTGTGAAACTCTCCATTAACAACATG  >  NC_002947/3478309‑3478604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.