| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3536478 = | 68 (1.100) | 5 (0.090) | 5/250 | NT | 6.8% | coding (116/543 nt) | PP_3125 | Cro/CI family transcriptional regulator |
| ? | NC_002947 | 3536516 = | 73 (1.250) | coding (154/543 nt) | PP_3125 | Cro/CI family transcriptional regulator | |||||
CCCGGCCCTTGCCCATCGCCAACCAGGGCCTGGCGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3536628‑3536478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagggcgCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGGGCAAGGGCCGGGGTACGCGGCCCTCACCAGTCAGATTGGCCAGCGCA > NC_002947/3536516‑3536663 CCCGGCCCTTGCCCATCGCCAACCAGGGCCTGGCGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGG > 1:236033/1‑149CCCGGCCCTTGCCCATCGCCAACCAGGGCCTGGCGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGG > 7:201111/1‑149 CCGGCCCTTGCCCATCGCCAACCAGGGCCTGGCGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGC > 8:270237/1‑149 CCGGCCCTTGCCCATCGCCAACCAGGGCCTGGAGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGC > 6:170122/1‑149 CCTTGCCCATCGCCAACCAGGGCCTGGCGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGG > 1:49621/1‑142 CCTTGCCCATCGCCAACCAGGGCCTGGCGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGG < 2:49621/142‑1 GCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGCGCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGG < 3:321970/140‑1 GCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGCGCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGG > 4:321970/1‑140 CGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGCGCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGGGCAAGGGCCG > 8:364820/1‑149 CCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGCGCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATG > 7:343278/1‑135 CCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGCGCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATG < 8:343278/135‑1 GAGGGCGCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGGGCAAGGGCCGGGGTACGCGGCCCTCACCAGTCAGATTGGC > 4:347190/1‑148 GCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGGGCAAGGGCCGGGGTACGCGGCCCTCACCAGTCAGATTGGCCAGCGCA < 5:328952/149‑1 GCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGGGCAAGGGCCGGGGTACGCGGCCCTCACCAGTCAGATTGGCCAGCGCA < 3:347190/149‑1 GCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGGGCAAGGGCCGGGGTACGCGGCCCTCACCAGTCAGATTGGCCAGCG > 4:148455/1‑147 GCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGG < 5:82251/102‑1 GCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGG > 6:82251/1‑102 CCCGGCCCTTGCCCATCGCCAACCAGGGCCTGGCGCTCGGTACGGCGCACCAGGCTGTAGCGGCTCTGCCCGGCCTGCTCTTCGGCGAAGAGCTCTTCGACATTGACGTTCAGCGCCCTCGCCAGTTTCAGCGCCGCAGCGATCGAGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3536628‑3536478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgagggcgCTGAACGTCAATGTCGAAGAGCTCTTCGCCGAAGAGCAGGCCGGGCAGAGCCGCTACAGCCTGGTGCGCCGTACCGAGCGCCAGGCCCTGGTTGGCGATGGGCAAGGGCCGGGGTACGCGGCCCTCACCAGTCAGATTGGCCAGCGCA > NC_002947/3536516‑3536663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |