New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3628934	48 (0.770)	3 (0.050)	3/258	NT	6.2%	coding (724/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	= 3628963	44 (0.730)					coding (753/1125 nt)	PP_3199	monooxygenase

GCAGGTATCGACCACCTTGCCAACTACCAAGGTCCCTCTGGCAACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3628784‑3628934 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAACCAGCCCCGCGTTGCCAGAG  <  NC_002947/3628963‑3628819                                                                                                                                                                                                                                                                                                          GCAGGTATCGACCACCTTGCCAACTACCAAGGTCCCTCTGGCAACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCG                                                                                                                                                     <  4:227123/149‑1                                           AACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGC                                                                                                             >  3:109747/1‑147                                           AACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGC                                                                                                             <  4:109747/147‑1                                              GCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACACCTGGATGGAACCTGCCGCTTTGGCTGATGGCCTCCGCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCA                                                                                                        <  4:215041/149‑1                                                                                                                                                    CGCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAACCAGCCCCGCGTTGCCAGAG  >  4:103736/1‑149                                                                                                                                                     GCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAACCAGCCCCGCGTTGCCAGAG  <  7:46370/148‑1                                                                                                                                                     GCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAAC                     <  3:95434/129‑1                                                                                                                                                     GCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAAC                     >  4:95434/1‑129                                                                                                                                                     GCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAAC                     <  5:353503/129‑1                                                                                                                                                     GCCGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAAC                     >  6:353503/1‑129                                                                                                                                                                                                                                                                                                          GCAGGTATCGACCACCTTGCCAACTACCAAGGTCCCTCTGGCAACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3628784‑3628934 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccGATCAGCCCGCCGAAGCCGGCAAGCCGCTGGCGGAGGCCATCAGCCAAAGCGGCCGGTTCCATCCAGGGGTTGCCCGGCTCGTGGGAGGTGGTGAAGAGGTACATCAGGTCATCGGCCAGCGGAACCAGCCCCGCGTTGCCAGAG  <  NC_002947/3628963‑3628819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.