New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3628934	48 (0.770)	3 (0.050)	3/258	NT	6.2%	coding (724/1125 nt)	PP_3199	monooxygenase
	?	NC_002947	= 3628963	44 (0.730)					coding (753/1125 nt)	PP_3199	monooxygenase

CTCTGGCAACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGG  >  NC_002947/3628819‑3629110                                                                                                                                                 |                                                                                                                                                    ctctGGCAACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggcg                                                                                                                                                 >  4:103736‑M2/1‑145 (MQ=255) ctctGGCAACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggc                                                                                                                                                  <  7:46370‑M2/148‑4 (MQ=255)      gCAACGCGGGGCTGGTTCGGCGGGCCGATGACCTGAGGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGaa                                                                                                                                               <  1:39779/146‑1 (MQ=255)            cgGGGCTGGTTCCGCTGGCAGATGACCTTATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATTGAACCGGCCGCTTTGTCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCTGGCTGATCGGCGAATTGCGCGAg                                                                                                                                      <  8:301068/149‑1 (MQ=255)                    gTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggc                                                                                                                                                  <  5:353503‑M2/129‑4 (MQ=255)                    gTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggc                                                                                                                                                  >  6:353503‑M2/1‑126 (MQ=255)                    gTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggc                                                                                                                                                  <  3:95434‑M2/129‑4 (MQ=255)                    gTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggc                                                                                                                                                  >  4:95434‑M2/1‑126 (MQ=255)                     ttCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGAtcgtc                                                                                                                             >  7:275371/1‑149 (MQ=255)                                 aTGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCggg                                                                                                                 <  8:27635/149‑1 (MQ=255)                                         aTGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGtt                                                                                                           <  1:288385/147‑1 (MQ=255)                                            tACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACaa                                                                                                      <  2:343254/149‑1 (MQ=255)                                              ccTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGt                                                                                                            <  7:137924/141‑1 (MQ=255)                                              ccTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGt                                                                                                            >  8:137924/1‑141 (MQ=255)                                                tctTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACGGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCg                                                                                                  >  1:74355/1‑149 (MQ=255)                                                     accaccTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTg                                                                                              >  2:76168/1‑148 (MQ=255)                                                     accaccTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTg                                                                                              >  7:55248/1‑148 (MQ=255)                                                       caccTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTg                                                                                              >  6:98083/1‑146 (MQ=255)                                                       caccTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGaa                                                                                            <  5:98083/148‑1 (MQ=255)                                                       caccTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAg                                                                                           >  6:310538/1‑149 (MQ=255)                                                             ccACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGgtgt                                                                                     >  6:319400/1‑149 (MQ=255)                                                                 gAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGt                                                                                 <  6:49513/149‑1 (MQ=255)                                                                  aGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTc                                                                                >  4:37647/1‑149 (MQ=255)                                                                         cAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAAc                                                                         <  1:293970/149‑1 (MQ=255)                                                                         cAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGGTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAAc                                                                         >  2:266827/1‑149 (MQ=255)                                                                               cTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTgg                                                                    >  1:22165/1‑148 (MQ=255)                                                                                       aaCCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGt                                                           >  7:173669/1‑149 (MQ=255)                                                                                        aCCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTc                                                          >  4:194906/1‑149 (MQ=255)                                                                                        aCCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTc                                                          <  5:81992/149‑1 (MQ=255)                                                                                         ccGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTcgacg                                                                            >  7:200768/1‑130 (MQ=255)                                                                                         ccGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTcgacg                                                                            <  8:200768/130‑1 (MQ=255)                                                                                                 tttGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                 >  8:45140/1‑149 (MQ=255)                                                                                                   tGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                 <  3:295717/147‑1 (MQ=255)                                                                                                     gCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTg                                                                     >  4:298371/1‑125 (MQ=255)                                                                                                     gCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTg                                                                     <  3:298371/125‑1 (MQ=255)                                                                                                       tGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggcggaggccatcagccaaagcggcaggttccatccaggtgttgcccggctcgtgggaggtggtgaagaggtacatcaggtcatcggccagcggaaccagccccgc                                           <  4:215041‑M2/149‑107 (MQ=255)                                                                                                       tGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCTCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtg                                                     >  8:202915/1‑139 (MQ=255)                                                                                                       tGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCTCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtg                                                     <  7:202915/139‑1 (MQ=255)                                                                                                       tGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCg                                           >  5:196422/1‑149 (MQ=255)                                                                                                         aTGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCgg                                          <  8:173669/148‑1 (MQ=255)                                                                                                         aTGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCgg                                          <  5:142547/148‑1 (MQ=255)                                                                                                          tGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCggg                                         <  7:97123/148‑1 (MQ=255)                                                                                                            gCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggcggaggccatcagccaaagcggccggttccatccaggggttgcccggctcgtgggaggtggtgaagaggtacatcaggtcatcggccagcggaaccagccccgcgtt                                        <  4:109747‑M2/147‑110 (MQ=255)                                                                                                            gCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCggcggaggccatcagccaaagcggccggttccatccaggggttgcccggctcgtgggaggtggtgaagaggtacatcaggtcatcggccagcggaaccagccccgcgtt                                        >  3:109747‑M2/1‑38 (MQ=255)                                                                                                              cTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                 <  8:232715/136‑1 (MQ=255)                                                                                                              cTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGtgctgc                                                 >  7:232715/1‑136 (MQ=255)                                                                                                                  gCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATgccgcc                                >  1:171121/1‑149 (MQ=255)                                                                                                                   ccAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATgccgcc                                >  7:333439/1‑148 (MQ=255)                                                                                                                    cAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCATCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCa                              >  3:27985/1‑149 (MQ=255)                                                                                                                              ccGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGccacca                      >  6:283590/1‑147 (MQ=255)                                                                                                                              ccGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGccacca                      <  5:283590/147‑1 (MQ=255)                                                                                                                               cGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGc                   >  3:89411/1‑149 (MQ=255)                                                                                                                                ggCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGcc                  <  3:37647/149‑1 (MQ=255)                                                                                                                                ggCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGcc                  >  1:248234/1‑149 (MQ=255)                                                                                                                                               aTCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcaggg   >  8:69937/1‑149 (MQ=255)                                                                                                                                                tCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCCACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTggggcagggg  <  1:123925/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CTCTGGCAACGCGGGGCTGGTTCCGCTGGCCGATGACCTGATGTACCTCTTCACCACCTCCCACGAGCCGGGCAACCCCTGGATGGAACCGGCCGCTTTGGCTGATGGCCTCCGCCAGCGGCTTGCCGGCTTCGGCGGGCTGATCGGCGAATTGCGCGAGCAGATCGTCGACAACGCCGGGGTCGTTTACAAGCCGCTTGAAGCGGTGTTTGTCGACGAACCCTGGTACTGCGGTCGAGTGCTGCTGATCGGGGATGCCGCCCATGCCACCACGCCACACCTGGGGCAGGGG  >  NC_002947/3628819‑3629110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.