New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3737918 = | 44 (0.710) | 4 (0.070) | 4/254 | NT | 8.3% | coding (2815/3093 nt) | PP_3302 | RND family transporter |
? | NC_002947 | 3737963 = | 46 (0.780) | coding (2860/3093 nt) | PP_3302 | RND family transporter |
GGGTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3738071‑3737918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtcGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGCCTACACCCTGATCGGAGGCACGTTCGTGGGCACGATCATGACCTTG > NC_002947/3737963‑3738109 GGGTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCCTCGAAGGGCGCAAGTCCTTCAAGCTGGTTG > 1:84484/1‑149 GGTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGT > 2:374762/1‑149 GTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGTTGAAGGCCAGGATGGCTGCCTATGCCGTGAGCAAGTCTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAATGGCGCAAGTCGTTCAAGCTGGTTGTG < 8:205878/149‑1 GTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTG < 1:312060/149‑1 GTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTG < 1:374762/149‑1 GTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTG > 7:37294/1‑149 TGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTGG < 8:201349/149‑1 TAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTGGT < 4:70530/148‑1 GCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTG > 1:151109/1‑149 CTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGC > 4:226743/1‑149 CCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGCCTACA > 3:23194/1‑149 GCTGGTTGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGCCTACACCCTGATCGGAGGCACGTTCGTGGGCACGA < 2:151109/149‑1 GTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCATGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGCCTACACCCTGATCGGAGGCACGTTCGTGGGCACGATCATGACCT < 1:288255/148‑1 TCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGCCTACACCCTGATCGGAGGCACGTTCGTGGGCACGATCATGACCTTG > 3:189605/1‑149 TCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGCCTACACCCTGATCGGAGGCACGTTCGTGGGCACGATCATGACCTTG < 4:23194/149‑1 GGGTGTAGGCCAAGGTGCCCCAGAACACCGAGTGGGTGAGGGGGATGAAGGCCAGGATGGCTGCCAATGCCGTGAGCAAGACTGGGCGTGCGCGTTGCACTGTGGCCTCGACCACGGCATCGAAGGGCGCAAGTCCTTCAAGCTGGTTGTGGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3738071‑3737918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggtcGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGCCTACACCCTGATCGGAGGCACGTTCGTGGGCACGATCATGACCTTG > NC_002947/3737963‑3738109 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |