New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3737918 =	44 (0.710)	4 (0.070)	4/254	NT	8.3%	coding (2815/3093 nt)	PP_3302	RND family transporter
	?	NC_002947	3737963 =	46 (0.780)					coding (2860/3093 nt)	PP_3302	RND family transporter

GTGTTTCTGACTTCACCGCTGGGGTTGATCGGCGTAGTACCCGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGC  >  NC_002947/3737771‑3738063                                                                                                                                                    |                                                                                                                                                  caaggtcatgatcgtgcccacgaacgtgcctccgatcagggtgtaggccaaggtgccccagaacaccgagtgggtgagggggatgaaggccaggatggctgccaatgccgtgagcaagactgggcgtgcgcgttgcactgtggcctcGa                                                                                                                                                  >  3:189605‑M1/148‑149 (MQ=255) caaggtcatgatcgtgcccacgaacgtgcctccgatcagggtgtaggccaaggtgccccagaacaccgagtgggtgagggggatgaaggccaggatggctgccaatgccgtgagcaagactgggcgtgcgcgttgcactgtggcctcGa                                                                                                                                                  <  4:23194‑M1/2‑1 (MQ=255)   aggtcatgatcgtgcccacgaacgtgcctccgatcagggtgtaggccaaggtgccccagaacaccgagtgggtgagggggatgaaggccatgatggctgccaatgccgtgagcaagactgggcgtgcgcgttgcactgtggcctcGAc                                                                                                                                                 <  1:288255‑M1/3‑1 (MQ=255)            tcgtgcccacgaacgtgcctccgatcagggtgtaggccaaggtgccccagaacaccgagtgggtgagggggatgaaggccaggatggctgccaatgccgtgagcaagactgggcgtgcgcgttgcactgtggcctcGACCACAACCAGc                                                                                                                                       <  2:151109‑M1/13‑1 (MQ=255)                   cTGGGGTTGATCGGCGTAGTACCCGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAg                                                                                                                                 >  5:172871/1‑148 (MQ=255)                              cGGCGTAGTACCCGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCt                                                                                                                     >  2:388466/1‑149 (MQ=255)                               ggCGTAGTACCCGTACTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCtt                                                                                                                    >  4:245549/1‑149 (MQ=255)                                gCGTAGTACCCGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTc                                                                                                                   >  3:303402/1‑149 (MQ=255)                                        cccGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGt                                                                                                           >  5:213864/1‑149 (MQ=255)                                         ccGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGAt                                                                                                                <  3:132020/143‑1 (MQ=255)                                         ccGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGAt                                                                                                                >  4:132020/1‑143 (MQ=255)                                          tgtaggccaaggtgccccagaacaccgagtgggtgagggggatgaaggccaggatggctgccaatgccgtgagcaagactgggcgtgcgcgttgcactgtggcctcGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTgg                                                                                                         >  3:23194‑M1/107‑149 (MQ=255)                                               tACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGa                                                                                                     <  7:134068/148‑1 (MQ=255)                                               gccaaggtgccccagaacaccgagtgggtgagggggatgaaggccaggatggctgccaatgccgtgagcaagactgggcgtgcgcgttgcactgtggcctcGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAg                                                                                                    >  4:226743‑M1/102‑149 (MQ=255)                                                aCTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAgg                                                                                                   >  5:222062/1‑149 (MQ=255)                                                aCTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAg                                                                                                    <  4:303402/148‑1 (MQ=255)                                                 ctgctgTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGc                                                                                                  >  5:354997/1‑149 (MQ=255)                                                 caaggtgccccagaacaccgagtgggtgagggggatgaaggccaggatggctgccaatgccgtgagcaagactgggcgtgcgcgttgcactgtggcctcGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGc                                                                                                  >  1:151109‑M1/100‑149 (MQ=255)                                                    ctgTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGcaa                                                                                                >  6:77365/1‑146 (MQ=255)                                                       ttCGGCCAACCGTTCGGCATCAACGCTTTAGTCGGCTTGATCTCGCTCTCCGGGATTCTGAAGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCcaca                                                                                              <  7:172231/147‑1 (MQ=255)                                                       ttCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGCAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGt                                                                                            >  6:310837/1‑149 (MQ=255)                                                       ttCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCcaca                                                                                              <  3:245549/147‑1 (MQ=255)                                                       ttCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGt                                                                                            <  1:211213/149‑1 (MQ=255)                                                                   ttCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCACATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACg                                                                                >  1:124264/1‑149 (MQ=255)                                                                       gCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGcc                                                                              >  2:57310/1‑147 (MQ=255)                                                                         aTCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGc                                                                                                                                       <  6:34490/88‑1 (MQ=255)                                                                         aTCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGc                                                                                                                                       >  5:34490/1‑88 (MQ=255)                                                                               gcgTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGc                                                                     >  8:23143/1‑148 (MQ=255)                                                                                 gTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGCTGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCa                                                                  >  5:389633/1‑149 (MQ=255)                                                                                      tCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTTGTCGAGGCCACAGTGCAACGCGCACGcc                                                                              <  8:41638/132‑1 (MQ=255)                                                                                      tCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGcc                                                                              >  7:41638/1‑132 (MQ=255)                                                                                        ggCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCAtt                                                           >  4:134388/1‑149 (MQ=255)                                                                                          cTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTgg                                                         >  8:37294/1‑149 (MQ=255)                                                                                             gATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAg                                                      >  4:227125/1‑149 (MQ=255)                                                                                               tCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGcc                                                    <  6:222062/149‑1 (MQ=255)                                                                                               tCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGcc                                                    <  6:354997/149‑1 (MQ=255)                                                                                                       tcCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTg                                              <  4:369589/147‑1 (MQ=255)                                                                                                       tcCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGc                                            >  2:123743/1‑149 (MQ=255)                                                                                                       tcCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGc                                            >  4:323775/1‑149 (MQ=255)                                                                                                         cGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCt                                          >  3:19228/1‑149 (MQ=255)                                                                                                         cGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCt                                          >  8:304165/1‑149 (MQ=255)                                                                                                         cGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCt                                          >  2:288255/1‑149 (MQ=255)                                                                                                                                      tGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTgg                                                         <  5:191920/105‑1 (MQ=255)                                                                                                                                      tGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTgg                                                         >  6:191920/1‑105 (MQ=255)                                                                                                                                        aTCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTTGCCTTCATCCCCCTCACCCACTCGGTGTTCTggg            <  1:57310/148‑1 (MQ=255)                                                                                                                                        aTCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTggg            <  2:190804/148‑1 (MQ=255)                                                                                                                                        aTCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTgg             <  6:172871/147‑1 (MQ=255)                                                                                                                                        aTCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTgg             <  7:23143/147‑1 (MQ=255)                                                                                                                                         tCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTgggg           >  2:39469/1‑148 (MQ=255)                                                                                                                                           gggCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTgggg           >  6:64281/1‑146 (MQ=255)                                                                                                                                           gggCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTgggg           <  5:64281/146‑1 (MQ=255)                                                                                                                                               aGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTg    >  7:271986/1‑149 (MQ=255)                                                                                                                                                 aTTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGc  <  5:77365/149‑1 (MQ=255)                                                                                                                                                 aTTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCACCCTCCCCCACTCGGTGTTCTGGGGCACCTTGGc  >  5:58592/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GTGTTTCTGACTTCACCGCTGGGGTTGATCGGCGTAGTACCCGTATTACTGCTGTTCGGCCAACCGTTCGGCATCAACGCGTTAGTCGGCTTGATCGCGCTCTCCGGGATTCTGATGCGCAACACCCTCATCCTGATCGGGCAGATTGACCACAACCAGCTTGAAGGACTTGCGCCCTTCGATGCCGTGGTCGAGGCCACAGTGCAACGCGCACGCCCAGTCTTGCTCACGGCATTGGCAGCCATCCTGGCCTTCATCCCCCTCACCCACTCGGTGTTCTGGGGCACCTTGGC  >  NC_002947/3737771‑3738063

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.