New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3878284 | 57 (0.920) | 5 (0.080) | 4/256 | NT | 8.1% | coding (119/3180 nt) | mexF | multidrug RND transporter MexF |
? | NC_002947 | = 3878313 | 59 (0.990) | coding (148/3180 nt) | mexF | multidrug RND transporter MexF |
TTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3878172‑3878284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGC‑AGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGT < NC_002947/3878313‑3878170 TTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGG > 1:166846/1‑149 CTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGG < 2:166846/148‑1 GAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGCGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAACTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGG < 7:53787/145‑1 TGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTC > 5:204913/1‑92 TGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTC < 6:204913/92‑1 GAAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGC‑AGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGT < 8:13971/149‑1 AAGTTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAATCCGCGATCAGCTTGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGT < 1:111020/149‑1 TTCTCGAAATTCTTCATTACCCGGCCGATCTTCGCCGCGGTGCTGTCGCTGGTGCTGCTGATCGCGGGTTCCATCTCGCTGTTCCAGCTGCCGATCAGCGAATACCCCGAAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3878172‑3878284 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagtTGGCGCGCACCACCACGGTGGGCGGCACCACTTCGGGGTATTCGCTGATCGGCAGCTGGAACAGCGAGATGGAACCCGCGATCAGC‑AGCACCAGCGACAGCACCGCGGCGAAGATCGGCCGGGTAATGAAGAATTTCGAGAAGT < NC_002947/3878313‑3878170 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |