New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4090228 =	49 (0.790)	3 (0.050)	3/252	NT	5.6%	coding (279/1365 nt)	gudP	glucarate transporter
	?	NC_002947	4090287 =	54 (0.920)					coding (338/1365 nt)	gudP	glucarate transporter

AAGCGCAGGGTGAAGAGGGTGACCACGGCCCAGGCAACCGGCAGGCCACCGACAAAACCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4090290‑4090228 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgcGCTTCCTGGTCGGTTTCGCCGAAGCCCCGTCATTCCCGGGTAACGCGCGCATCGTCGCCGCATGGTTCCCGACCCAGGAACGCGGCACGGCGTCGGCCATCTTCAACTCGGCGCAGTATTTCGCCACTGCACTGTTCGCCCCGA  >  NC_002947/4090287‑4090430                                                                                                                                                                                                                 AAGCGCAGGGTGAAGAGGGTGACCACGGCCCAGGCAACCGGCAGGCCACCGACAAAACCCTGCGCTTCCTGGTCGGTTTCGCCGAAGCCCCGTCATTCCCGGGTAACGCGCGCATCGTCGCCGCATGGTTCCCGA                                                                          >  1:227883/1‑135 AAGCGCAGGGTGAAGAGGGTGACCACGGCCCAGGCAACCGGCAGGCCACCGACAAAACCCTGCGCTTCCTGGTCGGTTTCGCCGAAGCCCCGTCATTCCCGGGTAACGCGCGCATCGTCGCCGCATGGTTCCCGA                                                                          <  2:227883/135‑1   GCGCAGGGTGAAGAGGGTGACCACGGCCCAGGCAACCGGCAGGCCACCGACAAAACCCTGCGCTTCCTGGTCGGTTTCGCCGAAGCCCCGTCATTCCCGGGTAACGCGCGCATCGTCGCCGCATGGTTCCCGACCCAGGAACGCGGCAC                                                          >  5:243604/1‑149                                                          CCCTGCGCTTCCTGGTCGGTTTCGCCGAAGCCCCGTCATTCCCGGGTAACGCGCGCATCGTCGCCGCATGGTTCCCGACCCAGGAACGCGGCACGGCGTCGGCCATCTTCAACTCGGCGCAGTATTTCGCCACTGCACTGTTCGCCCC    >  3:78507/1‑148                                                           CCTGCGCTTCCTGGTCGGTTTCGCCGAAGCCCCGTCATTCCCGGGTAACGCGCGCATCGTCGCCGCATGGTTCCCGACCCAGGAACGCGGCACGGCGTCGGCCATCTTCAACTCGGCGCAGTATTTCGCCACTGCACTGTTCGCCCCGA  >  5:324883/1‑149                                                                                                                                                                                                                 AAGCGCAGGGTGAAGAGGGTGACCACGGCCCAGGCAACCGGCAGGCCACCGACAAAACCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4090290‑4090228 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accctgcGCTTCCTGGTCGGTTTCGCCGAAGCCCCGTCATTCCCGGGTAACGCGCGCATCGTCGCCGCATGGTTCCCGACCCAGGAACGCGGCACGGCGTCGGCCATCTTCAACTCGGCGCAGTATTTCGCCACTGCACTGTTCGCCCCGA  >  NC_002947/4090287‑4090430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.