| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4281568 | 48 (0.770) | 4 (0.070) | 4/252 | NT | 8.3% | intergenic (‑145/+573) | PP_3751/PP_3753 | cyanate transporter/AraC family transcriptional regulator |
| ? | NC_002947 | = 4281598 | 43 (0.730) | intergenic (‑175/+543) | PP_3751/PP_3753 | cyanate transporter/AraC family transcriptional regulator | |||||
ACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4281444‑4281568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtggATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATCGTCCATTCAGGTGGCCACTGACCTGCATCCAATCTCTTCATTTCTGCCAGGCCAGCCGAGCCGGGATAATGGCCAG < NC_002947/4281598‑4281451 ACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGT > 5:261595/1‑123ACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGT < 6:261595/123‑1 AGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGATATGGCGCTACTGTAGCGCCGCTTA > 5:344448/1‑149 CATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCC < 6:344448/149‑1 TCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATA < 2:27443/149‑1 CCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAG < 5:40320/148‑1 GGGTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATCGTCCATTCAGGTGGCCACTGACCTGCATCCAATCTCTTCATTTCTGCCAGGCCAGCCGAGCCGGGATAATG > 1:148884/1‑149 GTGGATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATCGTCCATTCAGGTGGCCACTGACCTGCATCCAATCTCTTCATTTCTGCCAGGCCAGCCGAGCCGGGATAATGGC > 2:51337/1‑149 GATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATCGTCCATTCAGGTGGCCACTGACCTGCATCCAATCTCTTCATTTCTGCCAGGCCAGCCGAGCCGGGATAATGGCCAG > 5:4610/1‑149 GATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATCGTCCATTCAGGTGGCCACTGACCTGCATCCAATCTCTTCATTTCTGCCAGGCCAGCCGAGCCGGGATAATGGCCAG > 7:328214/1‑149 ACAGGAACTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGATTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4281444‑4281568‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggggtggATATGGCGCTACTGTAGCGCCGCTTATTGGCCACCCCGATAGCCAATTTTGCGCATAAGCGGGAGGCCAATCGTCCATTCAGGTGGCCACTGACCTGCATCCAATCTCTTCATTTCTGCCAGGCCAGCCGAGCCGGGATAATGGCCAG < NC_002947/4281598‑4281451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |