New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4281568	48 (0.770)	4 (0.070)	4/252	NT	8.3%	intergenic (‑145/+573)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	= 4281598	43 (0.730)					intergenic (‑175/+543)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator

CTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGCTGATACGCCTGCGC  >  NC_002947/4281451‑4281746                                                                                                                                                     |                                                                                                                                                     cTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATc                                                                                                                                                     >  5:4610‑M2/1‑148 (MQ=255) cTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATc                                                                                                                                                     >  7:328214‑M2/1‑148 (MQ=255)    gCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATccac                                                                                                                                                  >  2:51337‑M2/1‑145 (MQ=255)      cATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATccaccc                                                                                                                                                >  1:148884‑M2/1‑143 (MQ=255)        ttATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCca                                                                                                                                              >  1:16341/1‑149 (MQ=255)                    ggctGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGga                                                                                                                                    <  1:145053/147‑1 (MQ=255)                      ctggcctggcATAATTGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTTGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACt                                                                                                                                <  7:302529/149‑1 (MQ=255)                           atggcAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCTCCTGAATGGACGA‑TTGGCCTCCCGCTTATTCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACAt                                                                                                                           <  7:4530/148‑1 (MQ=255)                                         gagaTTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGAc                                                                                                                             <  7:302440/133‑1 (MQ=255)                                         gagaTTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGAc                                                                                                                             >  8:302440/1‑133 (MQ=255)                                            aTTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAAt                                                                                                          >  2:258763/1‑149 (MQ=255)                                            aTTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAAt                                                                                                          >  2:253334/1‑149 (MQ=255)                                               ggATGCAGGTCAGTGGCCACATGAATGGACGACTTGGCCTCCCGCTTATGCGCAAAATTGGCTATCTGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCAACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATgg                                                                                                        >  1:244540/1‑149 (MQ=255)                                                   gCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCa                                                                                                    >  8:237737/1‑148 (MQ=255)                                                            tGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGAGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCAACCCCACACGCTTGTAGACTGACATGAAAAACCGTATCCAATGGGCCAAaaacccccc                                                                                          >  3:99270/1‑144 (MQ=255)                                                                cACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGt                                                                                        >  7:312103/1‑147 (MQ=255)                                                                       aTGGACGA‑TTGGCCTCCAGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAAAAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATc                                                                               <  5:9436/149‑1 (MQ=255)                                                                          gACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGAc                                                                                                                                 >  6:134361/1‑96 (MQ=255)                                                                          gACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGAc                                                                                                                                 <  5:134361/96‑1 (MQ=255)                                                                          gACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAg                                                                            >  7:267418/1‑149 (MQ=255)                                                                             gA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCCAGCCa                                                                         >  3:209533/1‑149 (MQ=255)                                                                             gA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCa                                                                         >  2:246700/1‑149 (MQ=255)                                                                             gA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCa                                                                         >  1:223332/1‑149 (MQ=255)                                                                                   gCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTc                                                                    <  1:246700/149‑1 (MQ=255)                                                                                       cccGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGcc                                                                >  3:112162/1‑149 (MQ=255)                                                                                        ccGCTTATGCGCAAAATTGGCTATGGGGGTGTCCAATAAGCGTCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACAGTCGCCGTAAGCCTATCTTGCCTTGGTCGGc                                                                 <  4:99270/147‑1 (MQ=255)                                                                                        ccGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGc                                                                 <  8:267418/147‑1 (MQ=255)                                                                                          gCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACa                                                                                                                            >  8:247927/1‑86 (MQ=255)                                                                                                 cgcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATgg                                                                                                        >  3:112264/1‑99 (MQ=255)                                                                                                 cgcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATgg                                                                                                        <  4:112264/99‑1 (MQ=255)                                                                                                 cgcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGgc                                                      >  1:282775/1‑149 (MQ=255)                                                                                                 cgcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGgc                                                      >  1:341322/1‑149 (MQ=255)                                                                                                 cgcAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCCCCGTAAGCCTATCAAGCCATGGTAGGCCTGGAGCAg                                                        >  8:279242/1‑147 (MQ=255)                                                                                                   cAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGgcgc                                                    >  8:328136/1‑149 (MQ=255)                                                                                                       aTTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTCGAGCAGGCGCTGGc                                                <  7:328136/149‑1 (MQ=255)                                                                                                        ttGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGcc                                               <  7:171801/149‑1 (MQ=255)                                                                                                            cTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATccaccccgatagccaattttgcgcataagcgggaggccaatcgtccattcaggtggccactgacctgcatccaatctcttcatttctgccaggccagccgagccgg                                            <  5:40320‑M2/148‑107 (MQ=255)                                                                                                             tATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATccaccccgatagccaattttgcgcataagcgggaggccaatcgtccattcaggtggccactgacctgcatccaatctcttcatttctgccaggccagccgagccggga                                          <  2:27443‑M2/149‑109 (MQ=255)                                                                                                                 ggggTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGc                                      <  2:282775/149‑1 (MQ=255)                                                                                                                  gggTGGCCAATAAGCGGCGCTACAGTAGCGCCATATccaccccgatagccaattttgcgcataagcgggaggccaatcgtccattcaggtggccactgacctgcatccaatctcttcatttctgccaggccagccgagccgggataatg                                     <  6:344448‑M2/149‑114 (MQ=255)                                                                                                                  gggTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGcc                                     >  4:123580/1‑149 (MQ=255)                                                                                                                    gTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCa                                              <  5:301785/138‑1 (MQ=255)                                                                                                                    gTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCa                                              >  6:301785/1‑138 (MQ=255)                                                                                                                    gTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCtt                                   <  2:223332/149‑1 (MQ=255)                                                                                                                          aaTAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAaca                              >  4:34493/1‑148 (MQ=255)                                                                                                                            tAAGCGGCGCTACAGTAGCGCCATATccaccccgatagccaattttgcgcataagcgggaggccaatcgtccattcaggtggccactgacctgcatccaatctcttcatttctgccaggccagccgagccgggataatggccagttcct                           >  5:344448‑M2/1‑26 (MQ=255)                                                                                                                                 ggcgCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCgctgc                      <  1:253334/149‑1 (MQ=255)                                                                                                                                 ggcgCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCgctgc                      <  1:258763/149‑1 (MQ=255)                                                                                                                                   ctcTACAGTAGCGCCATATCCACCACACAAGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGctgctg                    <  2:244540/147‑1 (MQ=255)                                                                                                                                        cAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAg                 <  4:112162/147‑1 (MQ=255)                                                                                                                                          gTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGCTGa             <  8:194254/149‑1 (MQ=255)                                                                                                                                          gTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGCTGa             <  7:29996/149‑1 (MQ=255)                                                                                                                                                  atatCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGCTGATACGCCTg     >  1:167783/1‑149 (MQ=255)                                                                                                                                                     tCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGCTGATACGCCTgcgc  <  2:16341/149‑1 (MQ=255)                                                                                                                                                     tCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGCTGATACGCCTgcgc  >  5:285698/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CTGGCCATTATCCCGGCTCGGCTGGCCTGGCAGAAATGAAGAGATTGGATGCAGGTCAGTGGCCACCTGAATGGACGA‑TTGGCCTCCCGCTTATGCGCAAAATTGGCTATCGGGGTGGCCAATAAGCGGCGCTACAGTAGCGCCATATCCACCCCACACGCTTGGAGACTGACATGCACAACCGTATCGAATGGGCCAAACACGCGCCGTAAGCCTATCAAGCCATGGTCGGCCTGGAGCAGGCGCTGGCCAACAGCGGCCTTGAACACTCGCTGCTGGAGCTGATACGCCTGCGC  >  NC_002947/4281451‑4281746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.