New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5377629 =	60 (0.970)	3 (0.050)	3/248	NT	5.0%	intergenic (‑65/+37)	dnaK/grpE	chaperone protein DnaK/heat shock protein GrpE
	?	NC_002947	5377675 =	57 (0.990)					coding (549/558 nt)	grpE	heat shock protein GrpE

GTGTTGAACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGCCGAGCGCGGCGCAACCCTCGATCAATGAAAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAAGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5377782‑5377629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagccttTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATG  >  NC_002947/5377675‑5377822                                                                                                                                                                                                                                                                                                                GTGTTGAACGTGTTCCAGAAGGGTTACCTGCTTAACGGCCGCCTGCTGCTCCCCGCCATGGTGGTGGTCAGCAAGGCGCCGAGCGCGGCGCAACCCTCGATCAATGAAAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAA                                                                                                                                                           <  7:95686/149‑1    TTGAACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGCCGAGCGCGGCGCAACCCTCGATCAATGAAAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAAGCC                                                                                                                                                        >  6:345763/1‑149       AACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGCCGAGCGCCGCGCAACCCTCGATCAATGAAAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAAGCCTT                                                                                                                                                      >  8:78213/1‑148                                                                                                        ATGAAAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACA                                                    >  3:71696/1‑149                                                                                                         TGAAAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACAC                                                   >  6:111988/1‑149                                                                                                            AAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGT                                                 <  4:71696/148‑1                                                                                                                                                  TCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCA          >  2:77673/1‑149                                                                                                                                                  TCAAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGC           <  7:46149/148‑1                                                                                                                                                    AAGCCTTTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCAT         <  4:352844/148‑1                                                                                                                                                          TTTCATTGATCGAGGGTTGCGAAGCGCTCGGCGCCTTGCTGACCACCACAATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTAGACCTCGGCGTTTTCCTGCATGGCCATG  >  1:297272/1‑149                                                                                                                                                                                                                                                                                                                GTGTTGAACGTGTTCCAGAAGGGTTACCTGCTGAACGGCCGCCTGCTGCGCCCCGCCATGGTGGTGGTCAGCAAGGCGCCGAGCGCGGCGCAACCCTCGATCAATGAAAAGGCTTGAAATCCTTCGGGGCATCCCCATCTAGGTGTCAAGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5377782‑5377629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaagccttTTCATTGATCGAGGGTTGCGCCGCGCTCGGCGCCTTGCTGACCACCACCATGGCGGGGCGCAGCAGGCGGCCGTTCAGCAGGTAACCCTTCTGGAACACGTTCAACACGCTGTTTGGCTCGACCTCGGCGTTTTCCTGCATGGCCATG  >  NC_002947/5377675‑5377822

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.