| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5460311 = | 62 (1.000) | 5 (0.090) | 4/250 | NT | 8.3% | coding (730/1038 nt) | holA | DNA polymerase III subunit delta |
| ? | NC_002947 | 5460360 = | 52 (0.890) | coding (779/1038 nt) | holA | DNA polymerase III subunit delta | |||||
GGCCTTGCTGACCAGCGGTCGGCGTTTGTCCCAGATGGGCGGGCGGGCCTGGCTGAACGCTTTGTCCAATGGCACGCCTTGGCTGAACTGCTGGGCTAGCCCCGCCAGTTGGCGCAGCTCACGGGCCAAGGCCCAGAGGATGACTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5460460‑5460311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggcggGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTGGTCAGCAAGGCCCTGCAGCGCCTCTCGGCGCAGCGTTGGGCGCAACTGCTGCAGGA > NC_002947/5460360‑5460504 GGCCTTGCTGACCAGCGGTCGGCGTTTGTCCCAGATGGGCGGGCGGGCCTGGCTGAACGCTTTGTCCAATGGCACGCCTTGGCTGAACTGCTGGGCTAGCCCCGCCAGTTGGCGCAGCTCACGGGCCAAGGCCCAGAGGATGACTGGCG > 3:259043/1‑149 CCCGCCAGTTGGCGCAGCTCACGGGCCAAGGCCCAGAGGATGACTGGCGGGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTGGTCAGCAAGG > 6:365438/1‑149 CCCGCCAGTTGGCGCAGCTCACGGGCCAAGGCCCAGAGGATGACTGGCGGGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTG > 1:10125/1‑139 CCCGCCAGTTGGCGCAGCTCACGGGCCAAGGCCCAGAGGATGACTGGCGGGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTG < 2:10125/139‑1 CGCCAGTTGGCGCAGCTCACGGGCCAAGGCCCAGAGGATGACTGGCGGGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTGGTCAGCAAGGCC > 3:82449/1‑149 GGCCAAGGCCCAGAGGATGACTGGCGGGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTGGTCAGCAAGGCCCTGCAGCGCCTCTCGGCGCAG < 5:365438/149‑1 GCGGGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTGGTCAGCAAGGCCCTGCAGCGCCTCTCGGCGCAGCGTTGGGCGCAACTGCTGCAGGA > 4:340871/1‑149 GCGGGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTGGTCAGCAAGGCCCTGCAGCGCCTCTCGGCGCAGCGTTGGGCGCAACTGCTGCAGGA < 6:345229/149‑1 GGCCTTGCTGACCAGCGGTCGGCGTTTGTCCCAGATGGGCGGGCGGGCCTGGCTGAACGCTTTGTCCAATGGCACGCCTTGGCTGAACTGCTGGGCTAGCCCCGCCAGTTGGCGCAGCTCACGGGCCAAGGCCCAGAGGATGACTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5460460‑5460311‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actggcggGGCTAGCCCAGCAGTTCAGCCAAGGCGTGCCATTGGACAAAGCGTTCAGCCAGGCCCGCCCGCCCATCTGGGACAAACGCCGACCGCTGGTCAGCAAGGCCCTGCAGCGCCTCTCGGCGCAGCGTTGGGCGCAACTGCTGCAGGA > NC_002947/5460360‑5460504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |