| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5686182 = | 83 (1.340) | 4 (0.070) | 3/256 | NT | 5.1% | coding (711/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver |
| ? | NC_002947 | 5686222 = | 70 (1.170) | coding (671/4941 nt) | PP_4988 | signal transduction histidine kinase CheA/CheY‑like receiver | |||||
TGTGCGATGACTTGATGCGCATCAAGGAGCGCCTGGACCAGTTCGGGCGCGGCGACCGTCAGCACCGCGAACAGCTCGATGCGCTGTTGGCGCCGTTGCGCCACGTGGCTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5686333‑5686182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgTCAGCCACGTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGCGCCCGAACTGGTCCAGGCGCTCCTTGATGCGCATCAAGTCATCGCACAGTGCAGTCACCACCGAACGCAGCGCATCGCGCC > NC_002947/5686222‑5686366 TGTGCGATGACTTGATGCGCATCAAGGAGCGCCTGGACCAGTTCGGGCGCGGCGACCGTCAGCACCGCGAACAGCTCGATGCGCTGTTGGCGCCGTTGCGCCACGTGGCTGACACCCTGGGGGTACTGGGCTTTCAGCAACCGCGGCG > 5:225131/1‑148TGTGCGATGACTTGATGCGCATCAAGGAGCGCCTGGACCAGTTCGGGCGCGGCGACCGTCAGCACCGCGAACAGCTCGATGCGCTGTTGGCGCCGTTGCGCCACGTGGCTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGG > 4:23903/1‑149 GTGCGATGACTTGATGCGCATCAAGGAGCGCCTGGACCAGTTCGGGCGCGGCGACCGTCAGCACCGCGAACAGCTCGATGCGCTGTTGGCGCCGTTGCGCCACGTGGCTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGGG > 6:6812/1‑149 TGCGATGACTTGATGCGCATCAAGGAGCGCCTGGACCAGTTCGGGCGCGGCGACCGTCAGCACCGCGAACAGCTCGATGCGCTGTTGGCGCCGTTGCGCCACGTGGCTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCG < 6:225131/146‑1 GGCTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGGGTGTCAGCCACGTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGCGCCCGAACTGGTCCAGGCGCTCCTTGATGCGCATCAAGT > 7:307367/1‑149 CTGCCACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGGGTGTCAGCCACCTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGCGCCCGAACTGGTCCAGGCGCTCCATGCTTCGCATCAAGTC > 5:18453/1‑148 CTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGGGTGTCAGCCACGTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGC > 3:301056/1‑108 CTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGGGTGTCAGCCACGTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGC < 4:301056/108‑1 GGGTGTCAGCCACGTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGCGCCCGAACTGGTCCAGGCGCTCCTTGATGCGCATCAAGTCATCGCACAGTGCAGTCACCACCGAACGCAGCGCATCGCGC < 5:92562/149‑1 GGTGTCAGCCACGTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGCGCCCGAACTGGTCCAGGCGCTCCTTGATGCGCATCAAGTCATCGCACAGTGCAGTCACCACCGAACGCAGCGCATCGCGCC > 6:344844/1‑149 TGTGCGATGACTTGATGCGCATCAAGGAGCGCCTGGACCAGTTCGGGCGCGGCGACCGTCAGCACCGCGAACAGCTCGATGCGCTGTTGGCGCCGTTGCGCCACGTGGCTGACACCCTGGCGGTACTGGGCTTTCAGCAACCGCGGCGGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5686333‑5686182‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtgTCAGCCACGTGGCGCAACGGCGCCAACAGCGCATCGAGCTGTTCGCGGTGCTGACGGTCGCCGCGCCCGAACTGGTCCAGGCGCTCCTTGATGCGCATCAAGTCATCGCACAGTGCAGTCACCACCGAACGCAGCGCATCGCGCC > NC_002947/5686222‑5686366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |