New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 6000932 | 15 (0.240) | 3 (0.060) | 3/206 | NT | 20.3% | intergenic (+39/+70) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
? | NC_002947 | = 6000966 | 12 (0.250) | intergenic (+73/+36) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
CTGTTTGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6000755‑6000932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacaGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCC < NC_002947/6000966‑6000823 CTGTTTGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCG > 7:204987/1‑149 TTTGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGC < 1:246908/148‑1 AGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTC > 1:267973/1‑149 CAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTAGCACAAGTGAGCCTGTGCCGGCCTCTTCGC < 1:32336/149‑1 GCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGG < 3:279239/149‑1 CAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTC < 8:335310/148‑1 CAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCT > 3:304541/1‑147 CAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCT < 4:304541/147‑1 CAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAA > 3:123471/1‑140 CAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAA < 4:123471/140‑1 GACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTA > 6:292346/1‑149 CGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC < 3:184068/148‑1 TCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCG < 1:108436/149‑1 GTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGC < 5:1770/146‑1 GTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGC > 6:1770/1‑146 CCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAAC > 2:115319/1‑148 CCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAAC > 7:299917/1‑148 CCGCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGACCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATAGAAGCCGGCTTCTGCAACAACAAC > 3:12363/1‑148 GCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGAC > 8:225285/1‑149 GCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGA > 4:173407/1‑148 GCTCCTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAAAAACGc > 7:71076/1‑147 CTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCCCCCTTCTTGATAGAAGCCGGCTTCTGCAACAGCAACGACTCac > 1:336384/1‑147 CTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCC > 5:292346/1‑149 CTACAGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCC < 8:299917/149‑1 CTGTTTGCAGCAGCGTGGCGAAGTGCAGACGGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/6000755‑6000932 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcgggtaaacccgctcctacaGGTTCACCACAGCCCTCTCAGGCGGTGCACTACTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCTCACTTGTGCAACCAACTCAGGAAGCCACCCTTCTTGATTGAAGCCGGCTTCTGCAACAACAACGACTCCC < NC_002947/6000966‑6000823 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |