| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6000932 | 15 (0.240) | 3 (0.060) | 3/206 | NT | 20.3% | intergenic (+39/+70) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase |
| ? | NC_002947 | = 6000966 | 12 (0.250) | intergenic (+73/+36) | PP_5256/amaA | cyclic nucleotide‑binding protein/L‑pipecolate oxidase | |||||
GGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGC > NC_002947/6000785‑6001080 | ggCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACaa < 8:298431/149‑1 (MQ=255) gTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAag > 3:173407/1‑147 (MQ=255) ttGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAagtag < 8:363241/149‑1 (MQ=255) gCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCGTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTgaga < 7:33502/149‑1 (MQ=255) cGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAAAAGTAGTGCACCGCCAGcgag > 4:83594/1‑149 (MQ=255) ggcggcAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCCACAAGTAGTGCACCGCCTGAGAGGGCtg‑tg < 2:267973/149‑1 (MQ=255) gcAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTg‑tggtg > 1:115319/1‑148 (MQ=255) cAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGaa < 2:363591/149‑1 (MQ=255) agagCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTTAAACCGCACCTAAAACTAGTGCACCCCCAGAGAGGGCTG‑TGGTGAAc > 3:36948/1‑149 (MQ=255) gtgagTCGTTGCTGTTGCAGAAGCCGGCTTCTATCAAGAAGGGGGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtag > 1:336384‑M2/3‑144 (MQ=255) gggAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtag < 8:299917‑M2/149‑6 (MQ=255) gggAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtag > 5:292346‑M2/1‑144 (MQ=255) gTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagc > 8:225285‑M2/1‑140 (MQ=255) tCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcg < 1:108436‑M1/149‑45 (MQ=255) tCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagc > 4:173407‑M2/1‑139 (MQ=255) gcgTTTTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagc > 7:71076‑M2/2‑139 (MQ=255) cggacagcgttctatgagtccggtttttcgctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCg > 5:137520‑M1/75‑148 (MQ=255) gttgttgttGCAGAAGCCGGCTTCTATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGGTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagcgg > 3:12363‑M2/1‑137 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagc > 6:1770‑M1/1‑103 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagc < 5:1770‑M1/146‑44 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagcgg > 7:299917‑M2/1‑137 (MQ=255) gttgttgttGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagcgg > 2:115319‑M2/1‑137 (MQ=255) gCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCGTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGCGGGCTG‑TGGTCAACCTTTAGGAGCGGGTTTACCCGCGAAGAGGCCa < 8:195765/149‑1 (MQ=255) atcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAAc < 3:184687/111‑1 (MQ=255) atcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAAc > 4:184687/1‑111 (MQ=255) tcaaGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGACCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACtt > 1:86775/1‑148 (MQ=255) gctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGc > 4:364445‑M1/46‑118 (MQ=255) gctgtaccacgcggggcagtgcctgagggttgtgttgtaagtactGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGc < 3:364445‑M1/73‑1 (MQ=255) tgaagGGTGGCTTCCTGTTTTGTTTGCACATGTTAGCCTGTGCCGGCCTATTCGCGGTTAAACGCGCTCCTTCTAGTATTGCAGCGCCTGAGAGGGGTG‑TGGTGAACGTGTAGGAGCGGGTTTACCCGGGAAGAGGCCAGTACTTacaa < 8:204987/148‑1 (MQ=25) cgTGGCTTCCTGCGTTGGTTCCACAAGTGAGCCTGTGCCGGCCTCTACGCGTGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTTAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTacaacacaa < 5:70689/148‑1 (MQ=38) ttCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTTAACCCGCTCCTTCATGTTGTGCACCGGCTGAGAGGGGTG‑TGGTGTACCTGTAGGAGCGGGTTTAGACGCGAAGAGGGCAGTACTTACCACCCAACACTcc > 5:185172/1‑148 (MQ=37) ttgCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTTAACCCCCGCCGAAAAATAGTGGCCCCCCGGAGCGGGGTG‑TGGTGGACCGGTTGGGGCGGGTTTACCCCCGAAGAGGGCCCGAATTAAAACACAACCCACAGGCACAGCCCcg > 4:131989/1‑149 (MQ=255) acaAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTgag < 8:234545/65‑1 (MQ=255) TTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACGGCGAAAAACCGGACTc > 2:86775‑M1/1‑147 (MQ=255) TTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCa < 7:364274‑M1/148‑1 (MQ=255) GGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGCGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACAAAACCCTCATGCACTGCCACGCGTGGTACAGCGAAAAAACGGACTAATAGAAc < 7:300775‑M1/149‑1 (MQ=255) ACCCGCTCCTACAAGTAGTCCACCGCCTGAGAGGGCTG‑TGGTTAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTc > 3:131989‑M1/1‑149 (MQ=255) CCCGCTCCTACAAGTAGTGCACCGCGTTAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTcc > 3:83594‑M1/1‑149 (MQ=255) CCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAACGAAAAACCGGACTCATAGAACGCTGTcc < 3:347731‑M1/149‑1 (MQ=255) ccGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaac > 7:299917‑M1/1‑11 (MQ=255) ccGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaac > 2:115319‑M1/1‑11 (MQ=255) ccGCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggaccgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgatagaagccggcttctgcaacaacaac > 3:12363‑M1/1‑11 (MQ=255) CCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCcgc > 2:279101‑M1/1‑110 (MQ=255) CCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCcgc < 1:279101‑M1/110‑1 (MQ=255) cGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacga < 1:108436‑M2/149‑106 (MQ=255) gCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgac > 8:225285‑M1/1‑9 (MQ=255) gCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacga > 4:173407‑M1/1‑9 (MQ=255) gCTCCTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaaaaacgc > 7:71076‑M1/1‑9 (MQ=255) gCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaac < 5:1770‑M2/146‑104 (MQ=255) gCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCtgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaac > 6:1770‑M2/1‑43 (MQ=255) cTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccccccttcttgatagaagccggcttctgcaacagcaacgactcac > 1:336384‑M1/1‑5 (MQ=255) cTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgactccc > 5:292346‑M1/1‑5 (MQ=255) cTACAggttcaccacagccctctcaggcggtgcactacttgtaggagcgggtttacccgcgaagaggccggcacaggctcacttgtgcaaccaactcaggaagccacccttcttgattgaagccggcttctgcaacaacaacgactccc < 8:299917‑M1/149‑145 (MQ=255) CTACAAGTAGTGCACCGCCTGAGAGGGCTGGTGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGc < 1:28620‑M1/148‑1 (MQ=255) ACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAg < 3:167871‑M1/149‑1 (MQ=255) AAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGc < 7:276152‑M1/149‑1 (MQ=255) AAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGc < 8:349037‑M1/149‑1 (MQ=255) | GGCGTTGAGCAAATTGCAGCGGTTCCGGCGGCAGAGCCGGGAGTCGTTGTTGTTGCAGAAGCCGGCTTCAATCAAGAAGGGTGGCTTCCTGAGTTGGTTGCACAAGTGAGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGTAGTGCACCGCCTGAGAGGGCTG‑TGGTGAACCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGTACTTACAACACAACCCTCAGGCACTGCCCCGCGTGGTACAGCGAAAAACCGGACTCATAGAACGCTGTCCGCAGCGAAGGC > NC_002947/6000785‑6001080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |