New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6027913	38 (0.610)	9 (0.170)	8/224	NT	21.7%	intergenic (‑57/+54)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	= 6027928	33 (0.630)					intergenic (‑72/+39)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

CGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6027748‑6027913 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcaagcccgctcctgcaGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCATGCC  <  NC_002947/6027928‑6027783                                                                                                                                                                                                                                                                                                                           CGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGG                                                                                                                                                                     <  6:265198/149‑1       CCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGC                                                                                                                                                               >  2:29476/1‑149       CCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGC                                                                                                                                                               >  6:45132/1‑149        CCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCC                                                                                                                                                              >  1:26058/1‑149            GCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATATCCAGGGGCCCATTT‑GCGGGCAAGCCCGCT                                                                                                                                                          <  2:351138/149‑1               TCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCT                                                                                                                                                       >  3:233560/1‑149                 CAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGC                                                                                                                                                               >  3:260656/1‑139                 CAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGC                                                                                                                                                               <  4:260656/139‑1                  AGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCA                                                                                                                                                    <  8:261647/149‑1                                     GCATTCTCACGCCAAGCGCCAGCCCGACACTGAGAACCGATGCCAGTACGGCTAAGTAGGTACCCAAACGCATTACAGCCTCCCAGCCAATATTACCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCAGGGCTTCGCGACCGTTGCA                                                                                                                                 <  1:255844/149‑1                                                           CCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAG                                                                                                                                >  5:219427/1‑128                                                           CCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAG                                                                                                                                <  6:219427/128‑1                                                                            ATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGG                                                                                                                         <  4:46750/118‑1                                                                            ATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGG                                                                                                                         >  3:46750/1‑118                                                                                       GCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCT                                                                                                    <  7:32144/129‑1                                                                                       GCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCTTTTCGCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCT                                                                                                    >  8:32144/1‑129                                                                                                                     TCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAG                                                                                                                                <  5:69256/70‑1                                                                                                                     TCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAG                                                                                                                                >  6:69256/1‑70                                                                                                                                                           GCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCG            >  5:276801/1‑149                                                                                                                                                           GCCCGCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCG            >  3:305706/1‑149                                                                                                                                                               GCTCCTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAG        >  6:105792/1‑149                                                                                                                                                                   CTGCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCAT     <  3:211346/148‑1                                                                                                                                                                     GCAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCATGCC  >  3:23595/1‑149                                                                                                                                                                      CAGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCATGCC  >  7:219307/1‑148                                                                                                                                                                                                                                                                                                                           CGTAGCCCCAGGCCTCCAGGCGCAGGGACACCAGCGGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTT‑GCGGGCAAGCCCGCTCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6027748‑6027913 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcaagcccgctcctgcaGGTCTTCGCGACCGTTGCAGGAGCGGGCTTGCCCGCAAATGGGCCCCTGGAAATATTGGCTGGGAGGCTGTAATGCGTTGGGGTACCTACTTCGCCGTACTGGCATCGGTGCTCAGTGTCGGGCTGGCGCTTGGCGTGAGCATGCC  <  NC_002947/6027928‑6027783

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.