New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6027913	38 (0.610)	9 (0.170)	8/224	NT	21.7%	intergenic (‑57/+54)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	= 6027928	33 (0.630)					intergenic (‑72/+39)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

GGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGT  >  NC_002947/6027783‑6028076                                                                                                                                                  |                                                                                                                                                      ggCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgc                                                                                                                                                    >  3:23595‑M2/1‑146 (MQ=255) ggCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtg                                                                                                                                                     >  7:219307‑M2/1‑146 (MQ=255)    aTGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcag                                                                                                                                                  <  3:211346‑M2/148‑6 (MQ=255)       cTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagc                                                                                                                                              >  6:105792‑M2/1‑140 (MQ=255)           cGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggc                                                                                                                                          >  5:276801‑M2/1‑136 (MQ=255)           cGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggc                                                                                                                                          >  3:305706‑M2/1‑136 (MQ=255)                     cAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCcgcg                                                                                                                                 >  5:303553/1‑148 (MQ=255)                         ccGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCCGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAg                                                                                                                            <  5:326235/149‑1 (MQ=255)                           gACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGa                                                                                                                          <  1:167418/149‑1 (MQ=255)                              acTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCt                                                                                                                       <  6:303553/149‑1 (MQ=255)                                   gCACCGATGCCCGTACGGCTAAGTCGTTACCCCAACGCAATACCGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCACCGGTCGCGACCACCGGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCgg                                                                                                                  <  8:341249/149‑1 (MQ=255)                                   gCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCgg                                                                                                                  >  6:100639/1‑149 (MQ=255)                                   gCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGGCCCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCgg                                                                                                                  <  7:153530/149‑1 (MQ=255)                                         aTGCCAGTACGGCTAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACa                                                                                                            <  5:234752/149‑1 (MQ=255)                                         aTGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACa                                                                                                            <  2:7745/149‑1 (MQ=255)                                            ccAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGATGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGc                                                                                                          <  1:92019/148‑1 (MQ=255)                                                tACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGAt                                                                                                     >  1:343404/1‑149 (MQ=255)                                                    gCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑g                                                                                                >  7:196761/1‑149 (MQ=255)                                                                 cccAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGc                                                                                    >  4:103361/1‑148 (MQ=255)                                                                       gCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGgtgt                                                                             <  5:100639/149‑1 (MQ=255)                                                                       gCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTAAAGCTTGATCCA‑GGTCGCCTTCAGCTCGgtg                                                                              >  3:22046/1‑148 (MQ=255)                                                                        cATTCCAGCCTCCCCGCCAATTTTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTa                                                                            <  8:196761/149‑1 (MQ=255)                                                                                    ccAGCCATTATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCTCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAgtgc                                                                <  4:211346/149‑1 (MQ=255)                                                                                    ccAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCCGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAgtgc                                                                >  3:283825/1‑149 (MQ=255)                                                                                    ccAGCCAATATTTCCAGGCGCCCATTTGCTGGCAAGCGCGCTCCTGCAACGGTCGCCAAGACCTTCAGGAGGGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAgt                                                                  <  4:22046/147‑1 (MQ=255)                                                                                     cAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCTAGGGTCGCCTTCAGCTCGGTGTACTTCTCCAgtgc                                                                <  1:41201/149‑1 (MQ=255)                                                                                              tttCCAGGGGCCCATTTGCGGGCAAGCACGCTCCTGCAAAGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTAACGGGTTTCAGGGTGGTCCA‑GTTCTCCTTCAGCTAGGTGTACTTATACAGTTCGTGCAGCTAc                                                      >  4:277330/1‑149 (MQ=255)                                                                                                   aGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcgaaaagggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgc                                                                      <  7:32144‑M2/129‑82 (MQ=255)                                                                                                   aGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcgaaaagggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgc                                                                      >  8:32144‑M2/1‑48 (MQ=255)                                                                                                       gCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTAGTTCTCCAGTGCGTGCAGCggc                                                      >  6:219530/1‑138 (MQ=255)                                                                                                       gCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACgg                                             <  4:283825/149‑1 (MQ=255)                                                                                                           aTTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGt                                         >  1:266232/1‑149 (MQ=255)                                                                                                                cGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGccc                                    >  5:263775/1‑149 (MQ=255)                                                                                                                   gCACGCCCGCTCCTGCAACTGTCGCGACGACGTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCAc                                               <  8:311062/135‑1 (MQ=255)                                                                                                                   gCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGGCTTCAGCTCGGTGTACTTCTCCAGTGCGTGGAGCGCCTTGTCAc                                               >  7:311062/1‑135 (MQ=255)                                                                                                                       gCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACATGTCACGGCCGTTGCCCGACTGtt                             >  1:76253/1‑149 (MQ=255)                                                                                                                        cccGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcat                                                            >  3:46750‑M2/1‑27 (MQ=255)                                                                                                                        cccGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcat                                                            <  4:46750‑M2/118‑92 (MQ=255)                                                                                                                           gCTCCTGCACCGGTCGCTAAGACCTGCAGGAGCGGGCTTGCCCGCGAATAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGaa                         <  4:233560/149‑1 (MQ=255)                                                                                                                             tCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGc                       >  6:309916/1‑149 (MQ=255)                                                                                                                               cTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagtgtcggg                                           <  6:219427‑M2/128‑109 (MQ=255)                                                                                                                               cTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagtgtcggg                                           >  5:219427‑M2/1‑20 (MQ=255)                                                                                                                               cTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctggga                                                                                                     >  6:69256‑M2/1‑20 (MQ=255)                                                                                                                               cTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctggga                                                                                                     <  5:69256‑M2/70‑51 (MQ=255)                                                                                                                                tGCAACGGTCGCGAAGCCCtgcaggagcgggcttgcccgcaaatgggcccctggtaatattggctgggaggctgtaatgcgtttgggtacctacttagccgtactggcatcggttctcagtgtcgggctggcgcttggcgtgagaatgc                     <  1:255844‑M2/149‑131 (MQ=255)                                                                                                                                  cAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCAcc                   >  5:207422/1‑148 (MQ=255)                                                                                                                                        tCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGgc            <  2:343404/149‑1 (MQ=255)                                                                                                                                          gcgAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGgcg           <  6:207422/148‑1 (MQ=255)                                                                                                                                           cgAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGcgcg         >  6:150266/1‑149 (MQ=255)                                                                                                                                                  cTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGt  >  7:212426/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                      GGCATGCTCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCA‑GGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCATGT  >  NC_002947/6027783‑6028076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.