New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6113445	60 (0.970)	6 (0.100)	5/254	NT	9.4%	coding (575/1446 nt)	clsA	cardiolipin synthase
	?	NC_002947	= 6113467	58 (0.980)					coding (597/1446 nt)	clsA	cardiolipin synthase

TCGAAAAAGCACGCGATGTGGTACTGGTGCAGTTCTTCATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6113292‑6113445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtcACGCAGCACCTGGCTGTAGCTGGACGGCAAGGCATGGCTACCGACACGGTCGTACAGCACGAACACCTGCACGCCTTCGGCGGCTTTGCGTAGCAAGAGTTGCTGCAGTGCCTTGCCGAGGGTGTCGTCATGAATGATGAAGAAC  <  NC_002947/6113467‑6113323                                                                                                                                                                                                                                                                                                              TCGAAAAAGCACGCGATGTGGTACTGGTGCAGTTCTTCATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTG                                                                                                                                                        >  2:187985/1‑149  CGAAAAAGCACGCGATGTGGTACTGGTGCAGTTCTTCATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGC                                                                                                                                                       >  4:36708/1‑149   GAAAAAGCACGCGATGTGGTACTGATGCAGTTCTTCATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGACGAAGGCCTGCAGGTGTTAGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCC                                                                                                                                                      >  7:240822/1‑149    AAAAACCACGCGATGTGGAACTGGTGCAGGTCTTCGTCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTGTTACGACCGTGTCGGTAGCCATGCCTTGCC                                                                                                                                                      <  1:30188/149‑1                 TGTGGTACTGGTGCAGTTCTTCATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTCACGCAGCACCT                                                                                                                                        >  8:76955/1‑149                                GTTCTTCATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTCACGCAGCACCTGGCTGTAGCTGGACG                                                                                                                         <  3:345744/149‑1                                      CATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAG                                                                                                                    <  3:36708/148‑1                                      CATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAG                                                                                                                    <  8:283190/148‑1                                       ATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAGG                                                                                                                   <  7:76955/148‑1                                          ATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAGGCATG                                                                                                               <  4:178392/149‑1                                                                                                                                                      GCCGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAGGCATGGCTACCGACACGGTCGTACAGCACGAACACCTGCACGCCTTCGGCGGCTTTGCGTAGCAAGAGTTGCTGCAGTGCCTTGCCGAGGGTGTCGTCATGAATGATGAAG     >  5:277814/1‑148                                                                                                                                                       CCGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAGGCATGGCTACCGACACGGTCGTACAGCACGAACACCTGCACGCCTTCGGCGGCTTTGCGTAGCAAGAGTTGCTGCAGTGCCTTGCCGAGGGTGTCGTCATGAATGATGAAGAA   <  3:274164/149‑1                                                                                                                                                        CGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAGGCATGGCTACCGACACGGTCGTACAGCACGAACACCTGCACGCCTTCGGCGGCTTTGCGTAGCAAGAGTTGCTGCAGTGCCTTGCCGAGGGTGTCGTCATGAATGATGAAGAAC  >  1:346416/1‑149                                                                                                                                                        CGTCACGCAGCACCTGGCTGTAGCTGGACGGCAAGGCATGGCTACCGACACGGTCGTACAGCACGAACACCTGCACGCCTTCGGCGGCTTTGCGTAGCAAGAGTTGCTGCAGTGCCTTGCCGAGGGTGTCGTCATGAATGATGAAGAAC  <  8:69120/149‑1                                                                                                                                                                                                                                                                                                              TCGAAAAAGCACGCGATGTGGTACTGGTGCAGTTCTTCATCATTCATGACGACACCCTCGGCAAGGCACTGCAGCAACTCTTGCTACGCAAAGCCGCCGAAGGCGTGCAGGTGTTCGTGCTG‑TACGACCGTGTCGGTAGCCATGCCTTGCCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/6113292‑6113445 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgtcACGCAGCACCTGGCTGTAGCTGGACGGCAAGGCATGGCTACCGACACGGTCGTACAGCACGAACACCTGCACGCCTTCGGCGGCTTTGCGTAGCAAGAGTTGCTGCAGTGCCTTGCCGAGGGTGTCGTCATGAATGATGAAGAAC  <  NC_002947/6113467‑6113323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.