New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3065532	35 (0.560)	3 (0.050)	3/256	NT	8.6%	coding (472/768 nt)	PP_2677	hypothetical protein
	?	NC_002947	= 3065563	30 (0.500)					coding (503/768 nt)	PP_2677	hypothetical protein

TCGATCCGCATCCGCATCGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGAGTTCTTTCTCAACCATGCCGAGTTACAAGG  >  NC_002947/3065391‑3065680                                                                                                                                              |                                                                                                                                                     tCGATCCGCATCCGCATCGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGgga                                                                                                                                               <  8:97062/149‑1 (MQ=255) tCGATCCGCATCCGCATCGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGgga                                                                                                                                               <  7:134721/149‑1 (MQ=255)   gATCCGCATCCGCATCGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGggagg                                                                                                                                             <  5:293160/149‑1 (MQ=255)    atccgcatccgcATCGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGggagga                                                                                                                                            <  4:349558/149‑1 (MQ=255)        gcatccgcatcGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCAc                                                                                                                                        >  6:370676/1‑149 (MQ=255)        gcatccgcatcGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCAc                                                                                                                                        >  5:34918/1‑149 (MQ=255)             cgcatcGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCgg                                                                                                                                   <  2:262586/149‑1 (MQ=255)                 tcGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAg                                                                                                                               <  8:215626/149‑1 (MQ=255)                         gCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTggg                                                                                                                       >  8:32184/1‑149 (MQ=255)                          ccACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGcccagcacctccccgaggtgctcctcccagcc                                                                                                                      >  5:228260‑M1/1‑117 (MQ=255)                           cacaCCGCAGCGCGACGCTTTACTCACGCGCGATGGCCAGTGGCACGTCGGTTCGACCCTCAACGCTCCGGCCGGCGGCGGATGTACCGCACCAAGCGAGGTCCGCACCCAGACCTGCTGGGAGCAGCACCTCGGCGAGGTGCTgggcg                                                                                                                     >  4:273343/1‑149 (MQ=255)                             cacCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGcggg                                                                                                                   >  2:111928‑M2/1‑145 (MQ=255)                                cGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGcccagcacctccccgaggtgctcctcccagccgggctg                                                                                                                <  6:228260‑M1/149‑39 (MQ=255)                                cGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGgcgc                                                                                                                >  8:285379/1‑149 (MQ=255)                                 gCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGcccagcacctccccgaggtgctcctcccagccgggctgg                                                                                                               <  2:93002‑M1/149‑40 (MQ=255)                                        gccgcTGTACTGACGCGCGATGGCCTGTTGCACGTCGGTTCGACCCTGATAGATGCGGCCGGCGGCGGTTGTACCGCACCAAGCGTGGTGCGCACCCAGCCCGGCAGGGAGGAGAACCTAGTGGAGGTGCTgggcgggc                                                                                                                  >  4:321488/1‑139 (MQ=255)                                         ccgcTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGt                                                                                                       <  6:34918/149‑1 (MQ=255)                                                 cTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGAcag                                                                                               >  5:29630/1‑149 (MQ=255)                                                                    ggCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAg                                                                            <  3:273343/149‑1 (MQ=255)                                                                        cGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTgg                                                                        <  5:370676/149‑1 (MQ=255)                                                                              ttCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCAcc                                                                  <  3:46104/149‑1 (MQ=255)                                                                                  aCCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGCTGGCCCACCCCAt                                                              >  7:163853/1‑149 (MQ=255)                                                                                   cccTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATg                                                             <  6:29630/149‑1 (MQ=255)                                                                                       gATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGAt                                                          >  1:197113/1‑148 (MQ=255)                                                                                       gATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGAt                                                          >  6:136648/1‑148 (MQ=255)                                                                                        aTCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATgg                                                            <  4:115613/145‑1 (MQ=255)                                                                                        aTCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATgg                                                            >  3:115613/1‑145 (MQ=255)                                                                                               cggccggcGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTg                                                 <  5:361383/149‑1 (MQ=255)                                                                                                 gccggcGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGt                                               >  1:374894/1‑149 (MQ=255)                                                                                                     gcggcggTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGc                                           >  2:293819/1‑149 (MQ=255)                                                                                                             tGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTcc                                   >  5:231702/1‑149 (MQ=255)                                                                                                               tACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCt                                  <  2:197113/148‑1 (MQ=255)                                                                                                                 ccGCACCCAGCGTTGTGCGCACCCAGCCCGGCTGGGAGGATCACCTCGGGGAGTGGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGa                                <  7:194630/148‑1 (MQ=255)                                                                                                                 ccGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGa                                <  2:131605/148‑1 (MQ=255)                                                                                                                    cACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCCCCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGAGttc                            >  3:255480/1‑149 (MQ=255)                                                                                                                                tgCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCCGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGAGTTCTTTCTCCACCAt                >  4:52406/1‑149 (MQ=255)                                                                                                                                       ccAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGcgggctgggtgcgcaccacgctgggtgcggtacaaccgccgccggccgcatcgatcagggtcgaaccgacgtgccacaggccatcgcgcgtcagtacagcggcgcgcagc         <  2:93002‑M2/149‑111 (MQ=255)                                                                                                                                       ccAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGAGttct                           >  2:366067/1‑131 (MQ=255)                                                                                                                                       ccAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGAGTTCTTTCTCAACCATGCCGAGt         >  6:258159/1‑149 (MQ=255)                                                                                                                                       ccAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGAGTTCTTTCTCAACCATGCCGAGt         <  3:289763/149‑1 (MQ=255)                                                                                                                                        cAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGcgggctgggtgcgcaccacgctgggtgcggtacaaccgccgccggccgcatcgatcagggtcgaaccgacgtgccacaggccatcgcgcgtcagtacagcggcgcgcagcg        <  6:228260‑M2/149‑112 (MQ=255)                                                                                                                                           cccgcccagcacctccccgaggtgctcctcccagccgggctgggtgcgcaccacgctgggtgcggtacaaccgccgccggccgcatcgatcagggtcgaaccgacgtgccacaggccatcgcgcgtcagtacagcggcgcgcagcggtg     >  2:111928‑M1/1‑4 (MQ=255)                                                                                                                                              ggCTGGGAGGAGCACCTCGGGGAGGTGCTGGGcgggctgggtgcgcaccacgctgggtgcggtacaaccgccgccggccgcatcgatcagggtcgaaccgacgtgccacaggccatcgcgcgtcagtacagcggcgcgcagcggtgtgg  >  5:228260‑M2/1‑32 (MQ=255)                                                                                                                                              |                                                                                                                                                     TCGATCCGCATCCGCATCGAACAGGCCACACCGCTGCGCGCCGCTGTACTGACGCGCGATGGCCTGTGGCACGTCGGTTCGACCCTGATCGATGCGGCCGGCGGCGGTTGTACCGCACCCAGCGTGGTGCGCACCCAGCCCGGCTGGGAGGAGCACCTCGGGGAGGTGCTGGGCGGGCGCTACCCGCGTGGCGACAGCAGCCGCCTGCGCCTGCAGGTGGCCCACCCCATGGATAACGGCCTGGTCAGCGGCATTCCTGAGTTCTTTCTCAACCATGCCGAGTTACAAGG  >  NC_002947/3065391‑3065680

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.