New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3638056	36 (0.580)	3 (0.050)	3/250	NT	7.3%	coding (52/993 nt)	PP_3205	fumarylacetoacetate hydrolase family protein
	?	NC_002947	= 3638098	42 (0.720)					coding (94/993 nt)	PP_3205	fumarylacetoacetate hydrolase family protein

CCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGC  >  NC_002947/3637908‑3638203                                                                                                                                                     |                                                                                                                                                    ccaaccaTGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTCCCATGAAGCTCGCAACGTTCTACGACGGCAGCCGCGATGGTCGCCTGCTGGTGG                                                                                                                                                     >  5:299648‑M1/1‑149 (MQ=255)  caaccaTGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCtggtggt                                                                                                                                                    >  6:274006/1‑149 (MQ=255)       aTGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGccc                                                                                                                                               <  8:29054/149‑1 (MQ=255)       aTGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGccc                                                                                                                                               >  5:8079/1‑149 (MQ=255)          ccTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTg                                                                                                                                            <  1:361478/149‑1 (MQ=255)                    ccGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCa                                                                                                                                  >  3:151960/1‑149 (MQ=255)                        aGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCg                                                                                                                              >  3:290477/1‑149 (MQ=255)                               aGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATg                                                                                                                       <  7:216035/149‑1 (MQ=255)                                              tCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGcca                                                                                                        <  3:90599‑M2/149‑4 (MQ=255)                                                ttCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGcgatgtcgctggcatcgaccgcatgcccgaggtcacgggccaccac                                                                                                       >  7:279918‑M1/1‑102 (MQ=255)                                                  cATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccacc                                                                                                      >  7:253131‑M2/1‑142 (MQ=255)                                                    tCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTAGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCt                                                                                                  <  6:391394/149‑1 (MQ=255)                                                     ccTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCtt                                                                                                 >  2:299899/1‑149 (MQ=255)                                                      ctgctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGcgatgtcgctggcatcgaccgcatgcccgaggtcacgggccaccaccagcagg                                                                                                <  1:114065‑M1/149‑54 (MQ=255)                                                      ctgctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGcgatgtcgctggcatcgaccgcatgcccgaggtcacgggccaccaccagcag                                                                                                 <  8:279918‑M1/148‑53 (MQ=255)                                                       tgctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTg                                                                                                >  7:331513/1‑148 (MQ=255)                                                         ctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGc                                                                                               <  7:201404/147‑1 (MQ=255)                                                         ctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAg                                                                                             <  8:35904/149‑1 (MQ=255)                                                                  cGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGTCACGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGACACCAGCTTGCAGGTCGCGCTg                                                                                    >  1:240117/1‑149 (MQ=255)                                                                  cGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTg                                                                                    >  2:147340/1‑149 (MQ=255)                                                                   gTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTgg                                                                                   >  2:76744/1‑149 (MQ=255)                                                                    ttATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGa                                                                                  <  1:299899/149‑1 (MQ=255)                                                                          cGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTg                                                                            >  5:66525/1‑149 (MQ=255)                                                                          cGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTg                                                                            <  4:90599/149‑1 (MQ=255)                                                                              acacTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                        <  1:147340/149‑1 (MQ=255)                                                                                acTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCTCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                        >  6:362403/1‑147 (MQ=255)                                                                                acTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                        >  4:54580/1‑147 (MQ=255)                                                                                acTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                        <  3:54580/147‑1 (MQ=255)                                                                                       gAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGaa                                                               >  1:75889/1‑149 (MQ=255)                                                                                          ctgctgCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGca                                                            >  6:379658/1‑148 (MQ=255)                                                                                                 cATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTg                                                      >  3:121367/1‑148 (MQ=255)                                                                                                  aTGAAGCTCGCCACGTTCGACGACGGCAGCCTCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCa                                                    <  5:362403/149‑1 (MQ=255)                                                                                                    gAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTcgcg                                                                                       <  4:105494/112‑1 (MQ=255)                                                                                                     aaGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGgc                                                 >  4:186001/1‑149 (MQ=255)                                                                                                        cTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCt                                              <  6:66525/149‑1 (MQ=255)                                                                                                                 ttCGAAGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTAGCACGCGCTGTATcagca                                     >  2:303252/1‑149 (MQ=255)                                                                                                                        acgGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAac                              >  7:293752/1‑149 (MQ=255)                                                                                                                               ccGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATg                       <  6:8079/149‑1 (MQ=255)                                                                                                                                       gTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCg               >  7:321733/1‑149 (MQ=255)                                                                                                                                          gCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGt            <  4:151960/149‑1 (MQ=255)                                                                                                                                           ccTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcag           <  1:114065‑M2/149‑97 (MQ=255)                                                                                                                                            ctgctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcag           <  8:279918‑M2/148‑97 (MQ=255)                                                                                                                                             tgctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGcc         >  3:367561/1‑149 (MQ=255)                                                                                                                                               ctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGcc         <  5:379658/147‑1 (MQ=255)                                                                                                                                               ctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCtt       >  4:236933/1‑149 (MQ=255)                                                                                                                                                 ggtggcgatgtcgctggcatcgaccgcatgcccgaggtcacgggccaccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcaggatg       >  7:253131‑M1/1‑5 (MQ=255)                                                                                                                                                  gtggtggCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcaggatgaa     >  7:279918‑M2/1‑46 (MQ=255)                                                                                                                                                   tggcgatgtcgctggcatcgaccgcatgcccgaggtcacgggccaccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcaggatgaaga   <  3:90599‑M1/149‑147 (MQ=255)                                                                                                                                                     gtggCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCgcgc  <  2:75889/148‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CCAACCATGCCTGGAGCAACCGCAGCGAACAGATGGCCCGGATGGTCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGC  >  NC_002947/3637908‑3638203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.