New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3638056	36 (0.580)	3 (0.050)	3/250	NT	7.3%	coding (52/993 nt)	PP_3205	fumarylacetoacetate hydrolase family protein
	?	NC_002947	= 3638098	42 (0.720)					coding (94/993 nt)	PP_3205	fumarylacetoacetate hydrolase family protein

TCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCCGCGTGCCAG  >  NC_002947/3637953‑3638243                                                                                                                                                  |                                                                                                                                                  tCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGcca                                                                                                                                                <  3:90599‑M2/149‑4 (MQ=255)     cATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccacc                                                                                                                                              >  7:253131‑M2/1‑142 (MQ=255)       tCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTAGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCt                                                                                                                                          <  6:391394/149‑1 (MQ=255)        ccTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCtt                                                                                                                                         >  2:299899/1‑149 (MQ=255)          tgctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTg                                                                                                                                        >  7:331513/1‑148 (MQ=255)            ctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGc                                                                                                                                       <  7:201404/147‑1 (MQ=255)            ctgGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAg                                                                                                                                     <  8:35904/149‑1 (MQ=255)                     cGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGTCACGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGACACCAGCTTGCAGGTCGCGCTg                                                                                                                            >  1:240117/1‑149 (MQ=255)                     cGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTg                                                                                                                            >  2:147340/1‑149 (MQ=255)                      gTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTgg                                                                                                                           >  2:76744/1‑149 (MQ=255)                       ttATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGa                                                                                                                          <  1:299899/149‑1 (MQ=255)                             cGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTg                                                                                                                    <  4:90599/149‑1 (MQ=255)                             cGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTg                                                                                                                    >  5:66525/1‑149 (MQ=255)                                 acacTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                                                                <  1:147340/149‑1 (MQ=255)                                   acTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCTCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                                                                >  6:362403/1‑147 (MQ=255)                                   acTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                                                                >  4:54580/1‑147 (MQ=255)                                   acTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGccc                                                                                                                <  3:54580/147‑1 (MQ=255)                                          gAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGaa                                                                                                       >  1:75889/1‑149 (MQ=255)                                             ctgctgCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGca                                                                                                    >  6:379658/1‑148 (MQ=255)                                                    cATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTg                                                                                              >  3:121367/1‑148 (MQ=255)                                                     aTGAAGCTCGCCACGTTCGACGACGGCAGCCTCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCa                                                                                            <  5:362403/149‑1 (MQ=255)                                                       gAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTcgcg                                                                                                                               <  4:105494/112‑1 (MQ=255)                                                        aaGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGgc                                                                                         >  4:186001/1‑149 (MQ=255)                                                           cTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCt                                                                                      <  6:66525/149‑1 (MQ=255)                                                                    ttCGAAGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTAGCACGCGCTGTATcagca                                                                             >  2:303252/1‑149 (MQ=255)                                                                           acgGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAac                                                                      >  7:293752/1‑149 (MQ=255)                                                                                  ccGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATg                                                               <  6:8079/149‑1 (MQ=255)                                                                                          gTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCg                                                       >  7:321733/1‑149 (MQ=255)                                                                                             gCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGt                                                    <  4:151960/149‑1 (MQ=255)                                                                                              ccTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcag                                                   <  1:114065‑M2/149‑97 (MQ=255)                                                                                               ctgctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcag                                                   <  8:279918‑M2/148‑97 (MQ=255)                                                                                                tgctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGcc                                                 >  3:367561/1‑149 (MQ=255)                                                                                                  ctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGcc                                                 <  5:379658/147‑1 (MQ=255)                                                                                                  ctgGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCtt                                               >  4:236933/1‑149 (MQ=255)                                                                                                     gtggtggCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGccaccagcaggcgaccatcgcggctgccgtcgtcgaacgtggcgagcttcatggcagcagctccttgagtgtctcggcataacgcccatccagcaggatgaa                                             >  7:279918‑M2/1‑46 (MQ=255)                                                                                                        gtggCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCgcgc                                          <  2:75889/148‑1 (MQ=255)                                                                                                         tggCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTc                                        <  4:367561/149‑1 (MQ=255)                                                                                                          ggCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTc                                        >  7:294656/1‑148 (MQ=255)                                                                                                           gCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGa                                      <  8:293752/149‑1 (MQ=255)                                                                                                                  aCCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACctcgct                               <  3:186001/149‑1 (MQ=255)                                                                                                                    cTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACctcgctc                              >  3:369868/1‑148 (MQ=255)                                                                                                                       gggCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGAc                           <  8:321733/148‑1 (MQ=255)                                                                                                                              cGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTAt                                                                                  <  2:388668/86‑1 (MQ=255)                                                                                                                              cGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTAt                                                                                  >  1:388668/1‑86 (MQ=255)                                                                                                                                   gATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCt              >  6:231451/1‑149 (MQ=255)                                                                                                                                    aTGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTg             <  8:294656/149‑1 (MQ=255)                                                                                                                                     tGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGc            >  6:89721/1‑149 (MQ=255)                                                                                                                                       ccAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCcg          >  8:148320/1‑149 (MQ=255)                                                                                                                                         aGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCcgcg        >  8:685/1‑149 (MQ=255)                                                                                                                                         aGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCcgcg        >  5:392233/1‑149 (MQ=255)                                                                                                                                          gCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCCGCGt       >  2:262016/1‑149 (MQ=255)                                                                                                                                              cATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCCGCGTgcca   <  5:274006/149‑1 (MQ=255)                                                                                                                                               aTCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCCGCGTgccag  >  5:201886/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  TCTTCATCCTGCTGGATGGGCGTTATGCCGAGACACTCAAGGAGCTGCTGCCATGAAGCTCGCCACGTTCGACGACGGCAGCCGCGATGGTCGCCTGCTGGTGGTGGCCCGTGACCTCGGGCATGCGGTCGATGCCAGCGACATCGCCACCAGCTTGCAGGTCGCGCTGGAAAACTGGCCCCAGGTCGAAGCCCGCTTGCAGGCGCTGTATCAGCAGCTCAACGACGATGCGGTTGCGGGTGCCTTCGCGCTCGACCTCGCTCGACTGGCTGCGCCCCTGCCGCGTGCCAG  >  NC_002947/3637953‑3638243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.