New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3807518 =	57 (0.920)	3 (0.050)	3/258	NT	5.0%	coding (2134/2544 nt)	PP_3364	two‑component system response regulator
	?	NC_002947	3807557 =	58 (0.960)					coding (2173/2544 nt)	PP_3364	two‑component system response regulator

CAGCCGCAGCGGCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCA  >  NC_002947/3807370‑3807665                                                                                                                                                     |                                                                                                                                                     cAGCCGCAGCGGCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGaaa                                                                                                                                                      >  6:83615/1‑149 (MQ=255) cAGCCGCAGCGGCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGaaa                                                                                                                                                      >  1:50760/1‑149 (MQ=255)  gccaagcagttgcatggcttggtcctcggagctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaagcccgagcgcgctgcaaacgcAc                                                                                                                                                     <  4:106149‑M1/2‑1 (MQ=255)   ccaagcagttgcatggcttggtcctcggagctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaagcccgagcgcgctgcaaacgcAcc                                                                                                                                                    <  2:260597‑M1/3‑1 (MQ=255)    ccGCAGCGGCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCg                                                                                                                                                   <  6:339611/149‑1 (MQ=255)     aagcagttgcatggcttggtcctcggagctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaagcccgagcgcgctgcaaacgcACCGc                                                                                                                                                  <  1:26738‑M1/5‑1 (MQ=255)     aagcagttgcatggcttggtccacggagctggcggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaagcccgagcgcgctgcaaacgcACCg                                                                                                                                                   <  7:59473‑M1/4‑1 (MQ=255)      gCAGCGGCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGct                                                                                                                                                 >  7:67441/1‑149 (MQ=255)        aGCGGCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGctct                                                                                                                                               >  4:372509/1‑149 (MQ=255)            gCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCg                                                                                                                                           >  2:368981/1‑149 (MQ=255)                  gCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACg                                                                                                                                     <  5:213064/149‑1 (MQ=255)                        tGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTg                                                                                                                               >  7:233977/1‑149 (MQ=255)                         gCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTgg                                                                                                                              <  2:359709/149‑1 (MQ=255)                          cTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGTCCTGCAAGTCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAAACGCTCTCCCGGCCACGCCTCTGGc                                                                                                                             <  8:198164/149‑1 (MQ=255)                                gACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTg                                                                                                                        <  8:67441/148‑1 (MQ=255)                                 aCCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGc                                                                                                                       >  1:174147/1‑148 (MQ=255)                                     cagcaTCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCATGCAAGGCATTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAACCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACg                                                                                                                  >  5:79596/1‑149 (MQ=255)                                      ggtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaagcccgagcgcgctgcaaacgcACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACgg                                                                                                                 >  8:59473‑M1/112‑149 (MQ=255)                                       gtgatcacgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaagcccgagcgcgctgcaaacgcACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGt                                                                                                                >  2:26738‑M1/111‑149 (MQ=255)                                         aTCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGc                                                                                                              <  2:50760/149‑1 (MQ=255)                                            ccGTTCGACCTGGGTGGCACCAGCGCGGTGTAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGtt                                                                                                           >  1:34483/1‑149 (MQ=255)                                             cGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGttt                                                                                                          >  1:55695/1‑149 (MQ=255)                                              cgtccttgatttgcgcatcgttgagaatttgctccaggcctaccgcaatcaccagttgatcctcgagtatcagcacacacaagcccgagcgcgctgcaaacgcACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTg                                                                                                         >  2:215265‑M1/104‑149 (MQ=255)                                               ttCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGc                                                                                                        >  7:195360/1‑149 (MQ=255)                                                 cGACCTGGGTGGCACCAGCGCGGGGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCa                                                                                                       <  4:379583/148‑1 (MQ=255)                                                  gACCTGGGTGGCACCAGTGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAgc                                                                                                     <  6:343914/149‑1 (MQ=255)                                                              aCCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCtt                                                                                        >  3:72326/1‑149 (MQ=255)                                                              aCCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACCGTGCGTTTGCAGCGCG‑CTCGGGCtt                                                                                        >  5:221320/1‑149 (MQ=255)                                                                cAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTtgt                                                                                      <  5:83615/149‑1 (MQ=255)                                                                  gcgcGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTtgtgt                                                                                    >  4:307544/1‑149 (MQ=255)                                                                        tGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCt                                                                               >  1:311729/1‑148 (MQ=255)                                                                              atCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGtt                                                                                                           <  4:49795/115‑1 (MQ=255)                                                                              atCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGtt                                                                                                           >  3:49795/1‑115 (MQ=255)                                                                               tCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTc                                                                        >  2:382470/1‑148 (MQ=255)                                                                               tCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCg                                                                       <  2:311729/149‑1 (MQ=255)                                                                                cACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTc                                                                        >  7:256923/1‑147 (MQ=255)                                                                                 aCCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCGCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGa                                                                      <  2:18206/148‑1 (MQ=255)                                                                                 aCCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGa                                                                      <  8:233977/148‑1 (MQ=255)                                                                                 aCCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGa                                                                      <  1:368981/148‑1 (MQ=255)                                                                                   cccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGa                                                                   >  3:106149/1‑149 (MQ=255)                                                                                    ccGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGAt                                                                  >  2:195897/1‑149 (MQ=255)                                                                                        aGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAAc                                                              <  6:189241/149‑1 (MQ=255)                                                                                         ggCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACt                                                             <  8:195360/149‑1 (MQ=255)                                                                                           ccTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTgg                                                           >  2:309847/1‑149 (MQ=255)                                                                                            cTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGt                                                          <  2:207035/149‑1 (MQ=255)                                                                                               cAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCACGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGATGATCAACTGGTGAt                                                       >  3:224532/1‑149 (MQ=255)                                                                                                  ggCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGc                                                    >  1:356532/1‑149 (MQ=255)                                                                                                       tttCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTa                                                <  2:356532/148‑1 (MQ=255)                                                                                                        ttCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAgg                                              >  1:11914/1‑149 (MQ=255)                                                                                                        ttCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAg                                               <  2:55695/148‑1 (MQ=255)                                                                                                         tCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGc                                             >  6:38451/1‑149 (MQ=255)                                                                                                            gAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTg                                          <  5:2891/149‑1 (MQ=255)                                                                                                               tCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAg                                       <  8:256923/149‑1 (MQ=255)                                                                                                                        aGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTGTCCCGGCCAGGCGTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATtctc                              <  6:79596/149‑1 (MQ=255)                                                                                                                          cACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCaa                            <  7:120068/149‑1 (MQ=255)                                                                                                                          cACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCaa                            <  2:34483/149‑1 (MQ=255)                                                                                                                          cACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGAGATTGCGGTAGGCCTGGAGCAAATTCTCaa                            <  1:32705/149‑1 (MQ=255)                                                                                                                               ttCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAgg                                                                    <  4:150583/104‑1 (MQ=255)                                                                                                                               ttCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAgg                                                                    >  3:150583/1‑104 (MQ=255)                                                                                                                                  cGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATgcg                     >  1:88083/1‑148 (MQ=255)                                                                                                                                       ccGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATc               <  2:174147/149‑1 (MQ=255)                                                                                                                                       ccGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCA‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGc                                             <  2:293678/119‑1 (MQ=255)                                                                                                                                        cGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATc               >  8:360444/1‑148 (MQ=255)                                                                                                                                         gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATc               >  4:120120/1‑147 (MQ=255)                                                                                                                                         gAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCaa             <  6:221320/149‑1 (MQ=255)                                                                                                                                           aGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAgg           <  3:372509/149‑1 (MQ=255)                                                                                                                                              ggCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACg        >  7:228050/1‑149 (MQ=255)                                                                                                                                                cAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGt       >  2:82122/1‑148 (MQ=255)                                                                                                                                                 aGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCTAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGTGCAAATCAAGGACGTGa     <  1:309847/149‑1 (MQ=255)                                                                                                                                                  gAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGAt    <  7:261774/149‑1 (MQ=255)                                                                                                                                                   aaaCCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGAt    >  1:260597/1‑148 (MQ=255)                                                                                                                                                     ACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCGGCTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCa  <  1:290482‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CAGCCGCAGCGGCTTCGGCACGGTGCTGATCGACCGCAGCATCCCGTTCGACCTGGGTGGCACCAGCGCGGTGGAATATCACCCCGAAGGCCTGCAAGGCTTTTTCAGAATCCCGGCCAAGCACCTTTCCGTAGCCGAAGCGGCAGAAACCGCTCTCCCGGCCACGCCTCTGGCCCGTGCGAACGGTGCGTTTGCAGCGCG‑CTCGGGCTTGTGTGTGCTGATACTCGAGGATCAACTGGTGATTGCGGTAGGCCTGGAGCAAATTCTCAACGATGCGCAAATCAAGGACGTGATCA  >  NC_002947/3807370‑3807665

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.