New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4808179	1 (0.020)	7 (0.130)	4/226	NT	19.8%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988949	56 (1.060)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

TAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTA‑GGTGTTT‑GGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGA  >  NC_002947/4808031‑4808326                                                                                                                                                       |                                                                                                                                                    taGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTA‑GGTGTTT‑GGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTGTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGGTTCAGCGGCTGGGTTATCGAGCGCAGCCCGCG                                                                                                                                                     >  6:8152‑M1/1‑149 (MQ=255) taGGCCACTGGGCGTAATTGGCG‑GTTGGCGGGTATGGTGTGT‑GCGGGTTGGTCTCCCGGGCCTGGCCGGTGTGCG‑CGGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCcgcgc                                                                                                                                                    <  3:280257/149‑2 (MQ=12)    gtttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggcgcgggtttcCCcgcg                                                                                                                                                     <  6:384389‑M1/6‑1 (MQ=255)    ggCAATGGGCGGAATTCGCGCTTTGGCGGGTA‑GGTGTTT‑GGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTGTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcgg                                                                                                                                                  >  3:241948‑M1/1‑146 (MQ=255)     tttgtttcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCcgcg                                                                                                                                                     <  5:153200‑M1/6‑1 (MQ=255)           tcgggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgccg                                                                                                                                             <  8:122202‑M1/14‑1 (MQ=255)            gCGGAATGCCGGCTTTGGCTGGTA‑‑GTGTTTGGGCGGGAGTGTGGCAGCGGCTTGGAGGTGTTCGGCGGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCGGCGCCTGGGAGATCGAGCGCCGCCCGCGCGgcgcttcg                                                                                                                                           <  8:109820/148‑5 (MQ=16)             gggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcg                                                                                                                                           <  3:134634‑M1/16‑1 (MQ=255)              ggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgc                                                                                                                                          <  1:384295‑M1/17‑1 (MQ=255)              ggccagttattcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggacagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCcgcgc                                                                                                                                          <  2:355274‑M1/17‑1 (MQ=255)                aaTTCGCGCTTGGGCGGTTA‑GGTGTTT‑GGCGGGAGGCTTTCAGCTCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggt                                                                                                                                      <  5:8152‑M1/149‑16 (MQ=255)                        tcctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                                <  6:375937‑M1/27‑1 (MQ=255)                         cctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCt                                                                                                                                >  5:375937‑M1/122‑148 (MQ=255)                         cctgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTc                                                                                                                               <  7:301570‑M1/28‑1 (MQ=255)                           tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGa                                                                                                                             <  1:354696‑M1/30‑1 (MQ=255)                           tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGa                                                                                                                             <  7:178486‑M1/30‑1 (MQ=255)                           tgtgggacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGa                                                                                                                             <  5:392535‑M1/30‑1 (MQ=255)                                gacgcgcacgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTca                                                                                                                        >  1:355274‑M1/115‑149 (MQ=255)                                       acgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcg                                                                                                                                     <  6:201124‑M1/22‑1 (MQ=255)                                       acgcgagccccctggcgcacgcctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCgcgggcg                                                                                                                                     >  5:201124‑M1/108‑129 (MQ=255)                                          tt‑GGCGGGAGGGTTTCAGAGCCTGGTAGGTTTTCGCCGGTGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcg                                                                                                              <  3:353102‑M1/148‑40 (MQ=255)                                                gggAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaa                                                                                                        <  1:194771‑M1/149‑46 (MQ=255)                                                 ccttggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAAtcct                                                                                                       <  3:69966‑M1/52‑1 (MQ=255)                                                     ggggcatgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCgg                                                                                                   <  7:119276‑M1/56‑1 (MQ=255)                                                          atgtctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAac                                                                                              <  2:365874‑M1/61‑1 (MQ=255)                                                             tctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCg                                                                                                                              >  7:51316‑M1/86‑114 (MQ=255)                                                             tctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCg                                                                                                                              <  8:51316‑M1/29‑1 (MQ=255)                                                             ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgccgc                                                                                                                                            >  4:144073‑M1/86‑100 (MQ=255)                                                             ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgcctggcacaggagggattggccagaaacaaacgtaggagcgggtttaCCCGCGAAGcgccgc                                                                                                                                            <  3:144073‑M1/15‑1 (MQ=255)                                                              ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAAtcctc                                                                                                      <  8:163112‑M1/53‑1 (MQ=255)                                                              ctcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAAtcctc                                                                                                      >  7:163112‑M1/85‑137 (MQ=255)                                                               tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCTCTGAAAATACTCCGGCAAACACCt                                                                                          <  3:224775‑M1/65‑1 (MQ=255)                                                               tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                          <  2:14594‑M1/65‑1 (MQ=255)                                                               tcgatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCt                                                                                          <  6:60790‑M1/65‑1 (MQ=255)                                                                 gatatcgcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCa                                                                                        <  3:8665‑M1/67‑1 (MQ=255)                                                                       gcgtcgtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTc                                                                                  >  1:365874‑M1/76‑148 (MQ=255)                                                                          ttCGCCGTGCGATTTTCAGCGCCTGGGATGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCAAGCGCCGCGCGGGcggcgctcg                                                                                                                                            <  1:123287‑M1/87‑10 (MQ=255)                                                                            gtacaaacaaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGc                                                                            <  5:198919‑M1/79‑1 (MQ=255)                                                                                    aaggcggtcgcgcgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACt                                                                    >  5:60790‑M1/63‑149 (MQ=255)                                                                                      ttttCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggggca                                                                  >  7:113541‑M1/1‑66 (MQ=255)                                                                                                cgcgactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAc                                                        >  4:69966‑M1/51‑149 (MQ=255)                                                                                                   gactggtgcaggagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgcc                                                     <  6:184612‑M1/102‑1 (MQ=255)                                                                                                             gCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggg                                                                     <  8:297976‑M1/123‑81 (MQ=255)                                                                                                             gCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattattcctgcgggatttgcgcgcgaccgccttggg                                                                     >  7:297976‑M1/1‑43 (MQ=255)                                                                                                              gagggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCaa                                           <  1:156178‑M1/112‑1 (MQ=255)                                                                                                                     tggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCa                                                                      <  5:349996‑M1/85‑1 (MQ=255)                                                                                                                     tggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCa                                                                      >  6:349996‑M1/30‑114 (MQ=255)                                                                                                                       gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTcc                                                           >  5:115006‑M1/28‑123 (MQ=255)                                                                                                                       gccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTcc                                                           <  6:115006‑M1/96‑1 (MQ=255)                                                                                                                              caaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTc                          >  6:198919‑M1/21‑149 (MQ=255)                                                                                                                                  cgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCt                      >  1:14594‑M1/17‑149 (MQ=255)                                                                                                                                   gtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTc                     <  1:19932‑M1/134‑1 (MQ=255)                                                                                                                                        agcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGaaaa                >  5:184612‑M1/11‑149 (MQ=255)                                                                                                                                           gggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATcc             >  2:19932‑M1/8‑149 (MQ=255)                                                                                                                                           gggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATc              <  2:168280‑M1/141‑1 (MQ=255)                                                                                                                                                   CCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaacaaca      <  2:372439‑M1/148‑1 (MQ=255)                                                                                                                                                     GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCACAATTCCCACTCCGCCCCCTCAAAATTCAACAGCCGCCTCCCCTCGAACATCcgacaaca      <  8:128287‑M1/146‑1 (MQ=255)                                                                                                                                                     GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAg   <  6:38871‑M1/149‑1 (MQ=255)                                                                                                                                                      CGAATCGCCGAGCGTGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCTGCAAACACCTCAAAATTCCAACGCAGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACTCCGCCTCCCCTCGAAAATCCAACAACAAAGa  >  8:119276‑M1/1‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                    TAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTA‑GGTGTTT‑GGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGA  >  NC_002947/4808031‑4808326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.