New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5300626 = | 51 (0.820) | 3 (0.050) | 3/252 | NT | 5.6% | coding (3147/3675 nt) | recB | Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease |
? | NC_002947 | 5300683 = | 52 (0.890) | coding (3090/3675 nt) | recB | Chi activated ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease |
ATGCCGTTTAGCACGGTCGGCTGCGCAGCTGGGCGCGCCAGACCGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTATCAGTTGAGGGTT > NC_002947/5300480‑5300769 | ccttcctccatggttggctggagtgggcaggccgtgagggcttcagcgaggtcagcgctaaccctcaactgatagagcgtaccgttggccagcgctgcaatcgccgcgactgggccggctggatccccaccctgagccactggatgCAg > 3:86439‑M1/147‑149 (MQ=255) tGCCGTTTAGCACGGTCGGCTGCGCAGCTGGGCGCGCCAGACCGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGc < 4:121520/149‑1 (MQ=255) cttcctccatggtttgctggagtgggcaggccgtgagggcttcagcgaggtcagcgctaaccctcaactgatagagcgtaccgttggccagcgctgcaatcgccgcgactgggccggctggatccccaccctgagccactggatgCAGc < 8:169219‑M1/4‑1 (MQ=255) tGCGCAGCTGGGCGCGCCAGACCGGGGTGGGTGTGGCGTGCTACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGcc > 3:215674/1‑149 (MQ=255) tGCGCAGCTGGGCGCGCCAGACCGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCAGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGcc > 2:125792/1‑149 (MQ=255) gcAGCTGGGCGCGCCAGACCGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCgg > 5:169890/1‑149 (MQ=255) gcAGCTGGGCGCGCCAGACCGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCgg > 5:386920/1‑149 (MQ=255) ggCGCGCCAGACCGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAACg < 1:150103/147‑1 (MQ=255) cgcgcCAGACCGGGGTGGCTGGGGCGTTCCACCAGGCGATCGAGTTGTTCTGCGTCGACGCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCaa < 7:223478/149‑1 (MQ=255) cGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCt > 4:85000/1‑148 (MQ=255) gggtgTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAg > 4:355168/1‑145 (MQ=255) gggtgTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAg < 3:355168/145‑1 (MQ=255) ggtgTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCaaa < 6:169890/148‑1 (MQ=255) ggtgTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGAAATGACGCAGCTGGCCCAGCGTTACGCGCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAAc < 5:191456/149‑1 (MQ=255) gtgtGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCGATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACg < 3:217003/149‑1 (MQ=255) gctaaccctcaactgatagagcgtaccgttggccagcgctgcaatcgccgcgactgggccggctggatccccaccctgagccactggatgCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCa > 3:379366‑M1/91‑149 (MQ=255) gCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCa > 3:286428/1‑149 (MQ=255) gCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCa > 3:164473/1‑149 (MQ=255) accaGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAACCGCTGCATCCAGTg > 3:258744/1‑149 (MQ=255) tcaactgatagagcgtaccgttggccagcgctgcaatcgccgcgactgggccggctggatccccaccctgagccactggatgCa > 5:218998‑M1/83‑84 (MQ=255) tcaactgatagagcgtaccgttggccagcgctgcaatcgccgcgactgggccggctggatccccaccctgagccactggatgCa < 6:218998‑M1/2‑1 (MQ=255) ggCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCAAGCGTTACGCTCTGGTAGCTGCCCGGCAGCGGCAACGCCTAGCTCAGCAAACGATGCATCCAGTGGCt > 4:134563/1‑148 (MQ=255) gATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGTGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAgg > 8:334005/1‑149 (MQ=255) gATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAgg > 6:304823/1‑149 (MQ=255) gATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAgg > 6:327776/1‑149 (MQ=255) gATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAgg > 4:178462/1‑149 (MQ=255) gATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAgg < 4:215674/149‑1 (MQ=255) gATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAgg > 7:316732/1‑149 (MQ=255) gATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAgg > 1:374302/1‑149 (MQ=255) gAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGTTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTgg < 2:311014/149‑1 (MQ=255) gAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTgg < 3:178462/149‑1 (MQ=255) gAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTgg < 5:356846/149‑1 (MQ=255) aGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGgggggg > 5:5519/1‑149 (MQ=255) gttgttCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCTGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTgggg < 1:123078/149‑1 (MQ=255) gttgttCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTggg > 7:122370/1‑148 (MQ=255) gttgttCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTAGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTggg > 4:115968/1‑148 (MQ=255) gttCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTgg > 4:245394/1‑144 (MQ=255) gttCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTgg < 3:245394/144‑1 (MQ=255) ttCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATc > 6:98463/1‑148 (MQ=255) accgttggccagcgctgcaatcgccgcgactgggccggctggatccccaccctgagccactggatgCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCt < 7:187348‑M1/56‑1 (MQ=255) accgttggccagcgctgcaatcgccgcgactgggccggctggatccccaccctgagccactggatgCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCt > 8:187348‑M1/67‑122 (MQ=255) cTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCa < 8:122370/148‑1 (MQ=255) tGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAggg < 1:382979/137‑1 (MQ=255) tGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAggg > 2:382979/1‑137 (MQ=255) ccGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGACCCAGt > 4:110767/1‑149 (MQ=255) tggctggcGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTcgcg < 5:98463/149‑1 (MQ=255) ggctggcGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCgcgg > 1:56131/1‑149 (MQ=255) tggcGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTAGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTcgcg > 4:287041/1‑145 (MQ=255) gcGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGAt < 4:164473/148‑1 (MQ=255) gcGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGAt < 6:5519/148‑1 (MQ=255) cAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAgcg > 5:284379/1‑149 (MQ=255) tCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGc > 1:343797/1‑148 (MQ=255) cATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCaa > 2:46890/1‑149 (MQ=255) aTCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACg < 3:85000/149‑1 (MQ=255) tAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTAt < 2:374302/149‑1 (MQ=255) aCGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTATCAGt < 5:304823/148‑1 (MQ=255) aGCTGGCCCAGCGTTACGCTGTGGTCGGTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACTCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTATCAGTTGAgg < 6:386920/149‑1 (MQ=255) aGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTATCAGTTGAgg > 8:33814/1‑149 (MQ=255) aGCTAGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTATCAGTTGAgg < 3:115968/149‑1 (MQ=255) tGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTATCAGTTGAGGGtt > 8:212449/1‑149 (MQ=255) | ATGCCGTTTAGCACGGTCGGCTGCGCAGCTGGGCGCGCCAGACCGGGGTGGGTGTGGCGTGCCACCAGGCGATCGAGTTGTTCTGCGTCGACCCGGTGGCTGGCGAACCAGAACTCCATTTCAATCTGGTAATGACGCAGCTGGCCCAGCGTTACGCTCTGGTCGCTGCCCGGCAGCGGCAACGCCTCGCTCAGCAAACGCTGCATCCAGTGGCTCAGGGTGGGGATCCAGCCGGCCCAGTCGCGGCGATTGCAGCGCTGGCCAACGGTACGCTCTATCAGTTGAGGGTT > NC_002947/5300480‑5300769 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |