New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 131171949 (0.790)6 (0.110) 6/240 NT 11.3% intergenic (‑187/+91) PP_1144/rapA membrane protein/RNA polymerase‑associated protein RapA
?NC_002947 = 1311778 50 (0.890)intergenic (‑246/+32) PP_1144/rapA membrane protein/RNA polymerase‑associated protein RapA

AATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTT  >  NC_002947/1311638‑1311924
                                                                                                                                            |                                                                                                                                                  
aaTGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATACACTGCGGTGGATGCCACCGGCTTTTCCGGTGTTAGCGGGCGTgccccctc                                                                                                                                            <  3:92526‑M2/149‑9 (MQ=255)
          aCGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCGAAGCATCCACTGCGGTGGATTCCACCGGCTTTGCCCGTGTTCGCGGGCGTGCCCGCACCCCCAAgggg                                                                                                                                  >  8:216430/1‑149 (MQ=255)
           tgATTTGGTTATAACTCCATTCGATGTTAGTTATAAATTTGGGGCATTAATGGCTTCGTTTGGGAGCGGGCTAGCCCGAGAAGCATCCACTGCGGTTGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAgggg                                                                                                                                  <  8:172451/147‑1 (MQ=21)
                tGGTTATAACTCAAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCgg                                                                                                                             <  8:327530/148‑1 (MQ=255)
                gggTTATAACCCCAATCGCAGTTATCAATAATTTTGGGCCCCAAAGCCCTTCGTGTGGGTGGGGGCGCGCCGGCTATGAATCCCCTGGGGTGTTTGCCACGGGCTTGGCGGGTGTTCGGGGGCGTGCCCGCTCCCACAAGGGGCGCgg                                                                                                                             <  2:192701/147‑1 (MQ=255)
                 ggTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCggg                                                                                                                            <  8:204222/148‑1 (MQ=255)
                  gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGCAGCATCCACAGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCCTGCCCCCTCCCCCCAGGGGCGCGGGGc                                                                                                                          >  8:104134/1‑149 (MQ=38)
                  gTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCCGCTTTGCCGGTGTTAGCGGGCGTGCCCGCGCCCACAAGGGGCGCGGGGc                                                                                                                          >  5:107582/1‑149 (MQ=255)
                     ataACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCCCCAACCAAACACAGCCGGGGCTGCCCCCCCCGATGGCCGGGTTTGCGGGCGGGGCCCCCCCCACAAAAGgggccgggcccg                                                                                                                       >  1:342115/1‑147 (MQ=255)
                      taACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTgc                                                                                                                      <  2:59903/149‑1 (MQ=255)
                              aTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca                                                                                                              <  2:136871/149‑1 (MQ=255)
                              aTCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagcca                                                                                                              <  7:39658/149‑1 (MQ=255)
                               tCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCCGCATTTCCGGTGTTCGCCGGCGTGCCCCCTCCCACCAGGGGCGCCGGGCCTGCGCTagccag                                                                                                             >  6:119630/1‑149 (MQ=38)
                                 gCAGTGAGCAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTagccagcc                                                                                                           <  2:367740/149‑1 (MQ=255)
                                           aTAAATTGGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcgc                                                                                                 <  7:104134/149‑1 (MQ=255)
                                               aTTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAt                                                                                             <  8:20592/149‑1 (MQ=255)
                                                    gggCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGTGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCt                                                                                         <  4:326168/148‑1 (MQ=255)
                                                         cTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCCAAGCATACACAGCGGTGGATGCCACCCGCTTTTCCGGTGTTCCCGGGCGTGCCCCCACCCACAACGGGCGCCGCGCCAGCGCTAGCCAGCCACCACCACCCGCAAGGcatgcccg                                                                                   >  6:74992/1‑142 (MQ=25)
                                                                 ttCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTAGCGGGCGTGCCCGCTCCCACAAGGGGGGCGGGGCCGGCGCTAGCCAGCCCCCCGCCCGCGCATGGCGTCCAGGCGCAGggc                                                                           >  3:87535/1‑149 (MQ=25)
                                                                 ttCCTGTGGGAGCGGGCGAGCCCCCCAAGCAACCACAGCGCTGGATGCCACCCGCTTTGCCCGTGTTCGCGGGCGTGCCCCCTACCAAAAAGGGCCCCGGGCCTGCGCTAGCCAGCCACCAGCACGCGAAAGGCTTCCAGGCCCAGggc                                                                           >  2:256687/1‑149 (MQ=37)
                                                                     tgtgGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCGTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc                                                                       <  2:320601/149‑1 (MQ=255)
                                                                       tgGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGcc                                                                       <  5:231810/147‑1 (MQ=255)
                                                                                gCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCAt                                                            >  3:7870/1‑149 (MQ=255)
                                                                                gCGAGCCCGCGAAGCATACACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTAGCGGGCGTGCCCCCACCCACAACGGGCGCGGGGCCAGCGCAATCCAGCCACCAGCACCCGAATTGCTTACAGGCGCAGGGCGGCCTTCTACAGCAt                                                            >  8:294358/1‑149 (MQ=255)
                                                                                   aGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTTCAGGCGCAGGGCGGCCTTCTCCAGCATTGc                                                         <  7:324898/149‑1 (MQ=255)
                                                                                    gCCCGCGAAGCATCCACTGCGGTAGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCCGCCCCCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCGTCTCCa                                                                >  4:233008/1‑141 (MQ=255)
                                                                                    gCCCGCGAAGCATCCACTGCGGTAGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCa                                                                <  3:233008/141‑1 (MQ=255)
                                                                                      ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgta                                                                           <  4:180794‑M2/128‑74 (MQ=255)
                                                                                      ccGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgta                                                                           >  3:180794‑M2/1‑55 (MQ=255)
                                                                                       cgcgAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACaa                                                                                                                                      >  2:303374/1‑68 (MQ=255)
                                                                                       cgcgAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACaa                                                                                                                                      <  1:303374/68‑1 (MQ=255)
                                                                                        gcgAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCTCgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtcag                                                    <  6:313466‑M2/149‑97 (MQ=255)
                                                                                        gcgAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc                                                    >  8:325068/1‑149 (MQ=255)
                                                                                        gcgAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGc                                                    >  1:98797/1‑149 (MQ=255)
                                                                                          gAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcg                                                                                                  <  4:158774/101‑1 (MQ=255)
                                                                                          gAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCAcg                                                                                                  >  3:158774/1‑101 (MQ=255)
                                                                                            aGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttat                                                                                       >  3:128515‑M2/1‑49 (MQ=255)
                                                                                            aGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttat                                                                                       <  4:128515‑M2/110‑62 (MQ=255)
                                                                                               aTCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTc                                             >  4:295300/1‑149 (MQ=255)
                                                                                                tCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcg                                            >  8:12402/1‑149 (MQ=255)
                                                                                                  cACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTcgc                                           <  7:294358/148‑1 (MQ=255)
                                                                                                    cTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgcc                                        >  1:78285/1‑149 (MQ=255)
                                                                                                       cGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAgg                                                                             <  8:188548/109‑1 (MQ=255)
                                                                                                       cGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAgg                                                                             >  7:188548/1‑109 (MQ=255)
                                                                                                       cGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGcgccg                                       <  7:325068/147‑1 (MQ=255)
                                                                                                        ggTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCTCgcccgctcccacaggaaggcattagggccccaaatttattcctcactgcgattggagttataaccaaatcgtagaaatcattgtgccattagtcaggaaggcttaagtactc                                    >  5:313466‑M2/1‑37 (MQ=255)
                                                                                                          tGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTgc                                  <  5:119630/149‑1 (MQ=255)
                                                                                                                ccACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAggg                            >  6:307395/1‑149 (MQ=255)
                                                                                                                ccACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAgg                             <  2:98797/148‑1 (MQ=255)
                                                                                                                  aCCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCg                          >  2:98035/1‑149 (MQ=255)
                                                                                                                   ccGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGt                         >  5:115708/1‑149 (MQ=255)
                                                                                                                          tGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAggg                            >  7:286926/1‑139 (MQ=255)
                                                                                                                          tGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAggg                            <  8:286926/139‑1 (MQ=255)
                                                                                                                            ccGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGAttt                   >  5:228023/1‑146 (MQ=255)
                                                                                                                            ccGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGAttt                   <  6:228023/146‑1 (MQ=255)
                                                                                                                              ggTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCg                       >  3:37900/1‑140 (MQ=255)
                                                                                                                              ggTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCg                       <  4:37900/140‑1 (MQ=255)
                                                                                                                              ggTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTg              <  4:7870/149‑1 (MQ=255)
                                                                                                                                  ttCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCa           <  2:342115/148‑1 (MQ=255)
                                                                                                                                  ttCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCa           <  7:216430/148‑1 (MQ=255)
                                                                                                                                    cgcgGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACg         >  5:321469/1‑148 (MQ=255)
                                                                                                                                          cGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACtt  <  4:87535/149‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                                  
AATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAAGCATCCACTGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTCCCACAAGGGGCGCGGGGCCTGCGCTAGCCAGCCACCAGCACGCGAATGGCTTCCAGGCGCAGGGCGGCCTTCTCCAGCATTGCCAGGCCATCTTCGCGCCGCTTGCGCAGGGCGTCGATTTCGCTGTCACGCACACTT  >  NC_002947/1311638‑1311924

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.