New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1511842	54 (0.870)	4 (0.070)	4/254	NT	8.0%	coding (99/885 nt)	rsmI	16S rRNA 2'‑O‑ribose C1402 methyltransferase
	?	NC_002947	= 1511868	40 (0.680)					coding (125/885 nt)	rsmI	16S rRNA 2'‑O‑ribose C1402 methyltransferase

TGGCGCCTTTGATCCGAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCGGGTGAAAATGT  >  NC_002947/1511720‑1512015                                                                                                                                                        |                                                                                                                                                    tGGCGCCTTTGATCCGAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGt                                                                                                                                                     <  3:322001/149‑1 (MQ=255)   gcgcCTTTGATCCGAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTgg                                                                                                                                                   >  3:120264‑M2/1‑147 (MQ=255)      ccTTTGATCCGAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTggcgc                                                                                                                                                >  3:173320‑M2/1‑144 (MQ=255)          tGATCCGAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGa                                                                                                                                             <  8:92341/148‑1 (MQ=255)            aTCCGAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATc                                                                                                                                           <  6:191823/148‑1 (MQ=255)             tCCGAATGACAGGTGTGCGCAGTGCCTGGTGTGGCAGGGGCTTCGAAATCCTCGGAGGGGACGCTGTATGTGGTGGCAAGCCCCATCGGCAACCTCGACGAGATGAGCGCCAGGGCGGTGAAGGTGAGGG‑‑‑CGGACGTGGCGCTGCTcgc                                                                                                                                         >  8:165678/1‑149 (MQ=255)                gAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATcgccgc                                                                                                                                      >  1:147532/1‑149 (MQ=255)                gAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATcgccgc                                                                                                                                      >  6:120240/1‑149 (MQ=255)                         gtgtGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGacac                                                                                                                             >  3:363623/1‑149 (MQ=255)                               gcAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCa                                                                                                                       <  5:24909/149‑1 (MQ=255)                                 aGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCAtt                                                                                                                     <  8:24552/149‑1 (MQ=255)                                  gTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTc                                                                                                                    >  5:160915/1‑149 (MQ=255)                                              gCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCctgct                                                                                                        >  1:346235/1‑149 (MQ=255)                                              gCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCctgct                                                                                                        <  5:120240/149‑1 (MQ=255)                                                  gggCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCACCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCaa                                                                                                    >  1:224462/1‑149 (MQ=255)                                                         gAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACttt                                                                                              <  5:152853/148‑1 (MQ=255)                                                         gAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTg                                                                                             <  2:147532/149‑1 (MQ=255)                                                         gAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTg                                                                                             >  6:161286/1‑149 (MQ=255)                                                         gAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTg                                                                                             <  5:161286/149‑1 (MQ=255)                                                              ccACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATc                                                                                        >  2:352591/1‑149 (MQ=255)                                                               cACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATc                                                                                        >  7:215930/1‑148 (MQ=255)                                                                aCGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGa                                                                                      <  2:260878/149‑1 (MQ=255)                                                                      gggACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGc                                                                                 <  1:352591/148‑1 (MQ=255)                                                                         aCGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGtt                                                                             >  4:313101/1‑149 (MQ=255)                                                                           gCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTgg                                                                           <  6:160915/149‑1 (MQ=255)                                                                                   tggtggCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGt                                                                   <  6:331082/149‑1 (MQ=255)                                                                                    ggtggCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGt                                                                   <  5:140394/148‑1 (MQ=255)                                                                                    ggtggCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGt                                                                   >  6:140394/1‑148 (MQ=255)                                                                                     gtggCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCa                                                                 >  6:320006/1‑149 (MQ=255)                                                                                     gtggCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCa                                                                 >  3:223323/1‑149 (MQ=255)                                                                                         cAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAg                                                             <  3:313101/149‑1 (MQ=255)                                                                                            cccccATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGGCCACAGACGTGGTCTTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAg                                                             <  1:126388/149‑1 (MQ=255)                                                                                              cccATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACaa                                                        >  3:49438/1‑149 (MQ=255)                                                                                               ccATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAAc                                                       <  8:215930/149‑1 (MQ=255)                                                                                                         ccTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCACCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACg                                             <  2:224462/149‑1 (MQ=255)                                                                                                                gacATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAgggcgg                                      >  5:231641/1‑149 (MQ=255)                                                                                                                  cttcaGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAgggcgggc                                    >  1:388161/5‑149 (MQ=255)                                                                                                                   aTGAGCGCCCGGGCTCTGAAGGTGCTGG‑‑‑CGGACGTggcgctcatgtcgtcgaggttgccgattggggttgccacaacatacagcctccccaccctggatatcgaagcccctgccacatcagtcactgcgcacacctgtcattctgatc                                    <  8:27339‑M2/148‑114 (MQ=255)                                                                                                                   aTGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGACATGAGCACAACGAGCGTGACGAGggcgggcg                                   >  5:24907/1‑149 (MQ=255)                                                                                                                       gcgcCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGtttt                               >  1:388681/1‑149 (MQ=255)                                                                                                                         gcCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTggcgctcatgtcgtcgaggttgccgatgggggttgccaccacatacagcgtccccaccgtggatttc                                                                                  >  4:67052‑M2/1‑29 (MQ=255)                                                                                                                         gcCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTggcgctcatgtcgtcgaggttgccgatgggggttgccaccacatacagcgtccccaccgtggatttc                                                                                  <  3:67052‑M2/96‑68 (MQ=255)                                                                                                                           ccGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTggcgctcatgtcgtcgaggttgccgatgggggttgccaccacatacagcgtccccaccgtggatttcgaagcccctgccacatcagtcactgcgcacacctgtcattcggatcaaaggcgc                            <  6:65054‑M2/148‑122 (MQ=255)                                                                                                                                 gcTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAAc                     >  8:23199/1‑149 (MQ=255)                                                                                                                                         tGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGCCACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCGTGCGCACAGCGAGCGTGACGAGGGCGGGCGTGTTCTCTCCAAACTGGGGGCg             >  2:279022/1‑149 (MQ=255)                                                                                                                                         tGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCg             <  2:388161/149‑1 (MQ=255)                                                                                                                                           cTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCgg            <  4:363623/148‑1 (MQ=255)                                                                                                                                            tGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCGGGt          >  3:261053/1‑149 (MQ=255)                                                                                                                                                   ggACGTGGCGCTGATCGCCGCCGAAGACACCCGTCAGTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCGGGTGaa       >  2:67165/1‑148 (MQ=255)                                                                                                                                                     aCGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCGGGTGAAAAt    <  4:49438/149‑1 (MQ=255)                                                                                                                                                       gTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCGGGTGAAAAtgt  >  5:391190/1‑149 (MQ=255)                                                                                                                                                        |                                                                                                                                                    TGGCGCCTTTGATCCGAATGACAGGTGTGCGCAGTGACTGATGTGGCAGGGGCTTCGAAATCCACGGTGGGGACGCTGTATGTGGTGGCAACCCCCATCGGCAACCTCGACGACATGAGCGCCCGGGCGCTGAAGGTGCTGG‑‑‑CGGACGTGGCGCTGATCGCCGCCGAAGACACCCGTCATTCGATCCGCCTGCTGCAACACTTTGGCATCGATACGCCGTTGGCCGCTTGTCATGAGCACAACGAGCGTGACGAGGGCGGGCGTTTTCTCTCCAAACTGCTGGCGGGTGAAAATGT  >  NC_002947/1511720‑1512015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.