New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1947103 =	45 (0.730)	4 (0.070)	4/248	NT	9.2%	coding (637/1185 nt)	PP_1748	hypothetical protein
	?	NC_002947	1947144 =	37 (0.640)					coding (596/1185 nt)	PP_1748	hypothetical protein

GCGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTAGGCATC  >  NC_002947/1946997‑1947289                                                                                                                                                    |                                                                                                                                                  gcgtgagcattggtgatttcgtggccttcgacccattgcccgagttcaccgaacgcggccacatcagcgcccgtcacctggacgacaaggctggcgtagcggcattGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCaa                                                                                                                                                  >  4:218283‑M1/107‑149 (MQ=255)  cGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAAt                                                                                                                                                 <  6:382259/149‑1 (MQ=255)   gATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATg                                                                                                                                                >  6:181632/1‑149 (MQ=255)    aTGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGACTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGc                                                                                                                                               >  6:47002/1‑149 (MQ=255)             gtgatttcgtggccttcgacccattgcccgagttcaccgaaagcggccacatcagcgcccgtcacctggacgacaaggctggcgtagcggcattGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCa                                                                                                                                                   <  1:56223‑M1/42‑1 (MQ=255)             gtgatttcgtggccttcgacccattgcccgagttcaccgaaagcggccacatcagcgcccgtcacctggacgacaaggctggcgtagcggcattGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCa                                                                                                                                                   >  2:56223‑M1/95‑136 (MQ=255)             ccGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGc                                                                                                                                       <  6:67315/148‑1 (MQ=255)                   aaCTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCtt                                                                                                                                <  1:312422/149‑1 (MQ=255)                                cccAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGa                                                                                                                   >  6:169261/1‑149 (MQ=255)                                 ccAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGAc                                                                                                                  >  8:17766/1‑149 (MQ=255)                                    gggcagggcGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACggg                                                                                                               >  8:92933/1‑149 (MQ=255)                                      gcagggcGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTg                                                                                                                    <  5:241457/142‑1 (MQ=255)                                      gcagggcGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTg                                                                                                                    >  6:241457/1‑142 (MQ=255)                                       cagggcGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGgcgc                                                                                                            >  2:339342/1‑149 (MQ=255)                                        agggcGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCt                                                                                                           <  3:49405/149‑1 (MQ=255)                                        agggcGCCGGCTGCACCCGAGCAGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCt                                                                                                           <  2:317603/149‑1 (MQ=255)                                               cGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGgcgc                                                                                                            <  6:372475/141‑1 (MQ=255)                                               cGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGgcgc                                                                                                            >  5:372475/1‑141 (MQ=255)                                                   tGCACCCGAGCCGGGCTCCGCGGTGATGGGGAACAGCGGGGGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCGGATGTGGCCGc                                                                                                <  2:372739/149‑1 (MQ=255)                                                      aCCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCttt                                                                                             <  5:181632/149‑1 (MQ=255)                                                       cccGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTc                                                                                            >  1:47339/1‑149 (MQ=255)                                                          gAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGt                                                                                         <  1:339342/149‑1 (MQ=255)                                                               ggTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACt                                                                                    >  3:91088/1‑149 (MQ=255)                                                                gTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTc                                                                                   >  5:16073/1‑149 (MQ=255)                                                                               gTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCa                                                                                                                        >  6:240035/1‑97 (MQ=255)                                                                               gTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCa                                                                                                                        <  5:240035/97‑1 (MQ=255)                                                                               gTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGat                                                                    >  1:139606/1‑148 (MQ=255)                                                                                 gAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGc                                                                                                <  8:305489/119‑1 (MQ=255)                                                                                 gAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGc                                                                                                >  7:305489/1‑119 (MQ=255)                                                                                       cGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGCGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCg                                                                                           <  2:719/118‑1 (MQ=255)                                                                                       cGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGAGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCg                                                                                           >  1:719/1‑118 (MQ=255)                                                                                              cAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCAc                                                      >  4:251034/1‑148 (MQ=255)                                                                                               aGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCAcc                                                     >  2:3970/1‑148 (MQ=255)                                                                                                gTCGATCAGCGGCTTGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGGTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCaa                                                   <  5:47002/149‑1 (MQ=255)                                                                                                     tCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCt                                               >  2:138054/1‑148 (MQ=255)                                                                                                      cAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCACTGCTCa                                             >  5:260132/1‑149 (MQ=255)                                                                                                         ttgctggcggcactgaaggctgtggtggaaagcggccgccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCGTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGc                                          >  4:218283‑M2/44‑149 (MQ=255)                                                                                                          tgctggcggcactgaaggctgtggtggaaagcggccgccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCAc                                                      <  1:56223‑M2/94‑1 (MQ=255)                                                                                                          tgctggcggcactgaaggctgtggtggaaagcggccgccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCAc                                                      >  2:56223‑M2/43‑136 (MQ=255)                                                                                                          ggCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGcc                                         >  2:377778/1‑149 (MQ=255)                                                                                                             tggcggcactgaaggctgtggtggaaagcggccgccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAg                                      >  3:314250‑M2/40‑149 (MQ=255)                                                                                                             TGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATggg                                                                         <  6:170818‑M1/114‑1 (MQ=255)                                                                                                             TGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATggg                                                                         >  5:170818‑M1/1‑114 (MQ=255)                                                                                                                CGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGc                                   >  7:17766‑M1/1‑149 (MQ=255)                                                                                                                 aGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGGCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGcc                                  >  8:16456‑M1/2‑149 (MQ=255)                                                                                                                       tttCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAg                            >  3:330627/1‑149 (MQ=255)                                                                                                                         tCCACCACAGCCTTCAGTGCCGCCTGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGt                           >  7:241453/1‑148 (MQ=255)                                                                                                                           caccacAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGaa                                                                    <  6:263059/105‑1 (MQ=255)                                                                                                                            accacACCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGCGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAgc                       >  2:143296/1‑149 (MQ=255)                                                                                                                              cacaGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCATGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAgcgc                     >  5:329293/1‑149 (MQ=255)                                                                                                                              cacaGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAgcgc                     >  5:253851/1‑149 (MQ=255)                                                                                                                                         gTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAg          <  1:138054/149‑1 (MQ=255)                                                                                                                                           gccgccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCGTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTa        <  3:218283‑M2/140‑1 (MQ=255)                                                                                                                                            ccgccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTa        <  7:92933‑M2/140‑1 (MQ=255)                                                                                                                                            ccgccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTAg       <  4:330627‑M2/141‑1 (MQ=255)                                                                                                                                              gccagcAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCAGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTAgg      >  4:195605‑M2/7‑148 (MQ=255)                                                                                                                                                   cAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTAGGCATc  >  3:126422‑M2/2‑147 (MQ=255)                                                                                                                                                   cAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTAGGCATc  >  5:247645‑M2/2‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCGATGTCGATGCCGACGAACTCGCTGACGTCCCAGGGCAGGGCGCCGGCTGCACCCGAGCCGGTCTCCTCGGTGATGGTGAACAGCGGGTGGCAGTCGATCAGCGGCTGGCGGCCGCTTTCCACCACAGCCTTCAGTGCCGCCAGCAATGCCGCTACGCCAGCCTTGTCGTCCAGGTGACGGGCGCTGATGTGGCCGCTTTCGGTGAACTCGGGCAATGGGTCGAAGGCCACGAAATCACCAATGCTCACGCCCAGTGCCTCACAGTCAGCGCGCGTGGCGCAGTAGGCATC  >  NC_002947/1946997‑1947289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.