New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2521046 =	52 (0.840)	3 (0.050)	3/250	NT	6.0%	coding (2297/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
	?	NC_002947	2521074 =	45 (0.770)					coding (2325/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein

AGCACGGCGTACAGTGATGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACTGG  >  NC_002947/2520928‑2521222                                                                                                                                                     |                                                                                                                                                     aGCACGGCGTACAGTGATGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCaag                                                                                                                                                    <  1:299992/149‑1 (MQ=255)     cGGCGTACAGTGATGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCAGGGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCaagaag                                                                                                                                                 <  1:260403/149‑1 (MQ=255)      ggCGTACAGTGATGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAgaagaa                                                                                                                                               <  8:327518/149‑1 (MQ=255)          tACAGTGATGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGt                                                                                                                                           <  3:323190/149‑1 (MQ=255)             gaaagcgcctcgaagatacatcccggctcgtcagcgataaacacgtgtggcaaacctgacccgttgtagatcagaaacctgccttcatgcctgaccactattcttcttgcctcggtagcggcgggcgaaccgaggcAAGAAGAATAGTg                                                                                                                                          <  6:262008‑M2/13‑1 (MQ=255)               tGATGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCa                                                                                                                                      <  4:147080/149‑1 (MQ=255)                 aTGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAg                                                                                                                                     <  7:35744/148‑1 (MQ=255)                   gTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCa                                                                                                                                  >  6:122490/1‑149 (MQ=255)                      aCCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATg                                                                                                                                <  8:331324/148‑1 (MQ=255)                      aCCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATg                                                                                                                                >  2:40238/1‑148 (MQ=255)                       ccGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGaa                                                                                                                              <  1:40238/149‑1 (MQ=255)                        cggcggACTGGGGCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAAGTTGACCGCGACTTGCGCGCCCGCGGGCGGGATGGGCGGGCGATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑CCCGAGCGAAGAAGGAGAGTGGTGCGGCATGatg                                                                                                                             >  4:46983/1‑147 (MQ=255)                                tGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGttt                                                                                                                     >  3:256238/1‑149 (MQ=255)                                  gCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGC‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCt                                                                                                                   >  5:106672/1‑149 (MQ=255)                                              cTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCTGTCTATCA‑GGCGCCTCGGTAGCGGCGGGAGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACg                                                                                                        <  4:119385/148‑1 (MQ=255)                                                ataaacacgtgtggcaaacctgacccgttgtagatcagaaacctgccttcatgcctgaccactattcttcttGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCa                                                                                                                                                      <  7:90249‑M1/29‑1 (MQ=255)                                                ataaacacgtgtggcaaacctgacccgttgtagatcagaaacctgccttcatgcctgaccactattcttcttGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCa                                                                                                                                                      >  8:90249‑M1/73‑101 (MQ=255)                                                 gATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGt                                                                                                     <  7:221085/148‑1 (MQ=255)                                                      cTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGtt                                                                                               >  1:162160/1‑149 (MQ=255)                                                       ttCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGttt                                                                                              >  7:218898/1‑149 (MQ=255)                                                       ttCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGttt                                                                                              >  4:115515/1‑149 (MQ=255)                                                          gAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGc                                                                                            <  3:124137/148‑1 (MQ=255)                                                          gAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGc                                                                                            >  7:37845/1‑148 (MQ=255)                                                           aaCTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCca                                                                                          <  4:256238/149‑1 (MQ=255)                                                                   cAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGtt                                                                                  >  2:64441/1‑149 (MQ=255)                                                                     agttGACTTGGTCTTGCGCGACGGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCTA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGTTCTACAACGGTTCAGGTTTGCCACACGTGTTTa                                                                                <  8:37845/147‑1 (MQ=255)                                                                     aCTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTa                                                                                >  7:139252/1‑149 (MQ=255)                                                                      cTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTAt                                                                               >  5:297782/1‑149 (MQ=255)                                                                           ccTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGa                                                                                                                 <  7:37453/110‑1 (MQ=255)                                                                           ccTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGa                                                                                                                 >  8:37453/1‑110 (MQ=255)                                                                            cTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACATCGGGTCAGGTGTGCCAGACGTGTTTATCGCTGa                                                                         >  4:189640/1‑149 (MQ=255)                                                                            cTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGa                                                                         >  2:226175/1‑149 (MQ=255)                                                                             tCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGAc                                                                        >  2:250573/1‑149 (MQ=255)                                                                             tCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGGCAGGTTTGCCACACGTGTTTATCGCTGAc                                                                        >  7:129879/1‑149 (MQ=255)                                                                                     cgcgACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCggg                                                                <  6:297782/149‑1 (MQ=255)                                                                                       cgACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGAt                                                              <  1:64441/149‑1 (MQ=255)                                                                                       cgACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGAt                                                              <  8:218898/149‑1 (MQ=255)                                                                                        gACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATg                                                             >  4:25230/1‑149 (MQ=255)                                                                                        gACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGAAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGATGACGAGACGGGATg                                                             >  4:339441/1‑149 (MQ=255)                                                                                           cgcgGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACAAGTGTTTATCGCTGTCGAGCCGGGATGTAt                                                          >  5:307033/1‑149 (MQ=255)                                                                                               ggCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGAt                                                                                                                >  4:153929/1‑91 (MQ=255)                                                                                               ggCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGAt                                                                                                                <  3:153929/91‑1 (MQ=255)                                                                                                    gATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGgc                                                 >  7:88552/1‑149 (MQ=255)                                                                                                    gATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGgc                                                 <  1:8694/149‑1 (MQ=255)                                                                                                       gggCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCt                                              >  2:41674/1‑149 (MQ=255)                                                                                                           cactattcttcttGCCTCGGTT‑CGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTc                                           <  6:262008‑M1/136‑1 (MQ=255)                                                                                                               tATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCg                                      >  1:211505/1‑149 (MQ=255)                                                                                                                  cA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGGTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGCCGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCAc                                   >  4:252651/1‑149 (MQ=255)                                                                                                                   a‑GGCGCCTCTGTAGCGGCGGGAGA‑TCCGTGGCTAGAAGATTAGGGGTGAGGCATGAAGGCAGGTTTCTGTTCTTCATCGGGTGATGGTTGCCTGTGGTGTTTATCGCTGAGGAGCCGGGCTGTATCTTCGAGTCGCTTTCTGGCGCAc                                   <  2:324367/148‑1 (MQ=255)                                                                                                                       cgcCTCGGTAGCGGAGGGCTA‑ACCGAGTCAATAAGAATAGTGGTCAGGCATGAATGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGTCGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGAc                               <  6:307033/149‑1 (MQ=255)                                                                                                                        tgcctcggttcgcccgccgctaccgaggcAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTAt                                                                               >  8:90249‑M2/30‑101 (MQ=255)                                                                                                                        tgcctcggttcgcccgccgctaccgaggcAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTAt                                                                               <  7:90249‑M2/72‑1 (MQ=255)                                                                                                                          CTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATc                            >  3:115515‑M1/1‑149 (MQ=255)                                                                                                                           TCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAg                                                   <  5:75661‑M1/125‑1 (MQ=255)                                                                                                                           TCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAg                                                   >  6:75661‑M1/1‑125 (MQ=255)                                                                                                                              GTAGCGGCGGGCGA‑ACCTATGCAAGAAGTATAGTCGTCAGGCATGATGGCAGGTTTCTGATCTACAACGGGTCATGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCagag                        >  8:129879‑M1/1‑149 (MQ=255)                                                                                                                              GTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCagag                        >  8:139252‑M1/1‑149 (MQ=255)                                                                                                                                        gcgA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAg              <  7:248495/149‑1 (MQ=255)                                                                                                                                              ccgaggcAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATg         <  3:25230‑M2/142‑1 (MQ=255)                                                                                                                                                  ggcAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACTGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAAc     >  1:91879‑M2/4‑149 (MQ=255)                                                                                                                                                  ggcAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAAc     <  1:41674‑M2/146‑1 (MQ=255)                                                                                                                                                    cAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACTg   <  5:122490‑M2/148‑1 (MQ=255)                                                                                                                                                     aagaagAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACtgg  >  3:286712/1‑149 (MQ=255)                                                                                                                                                     aagaagAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACtgg  >  5:118763/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGCACGGCGTACAGTGATGTCACCGGCGAACTGGCCCTTGCGTTGCTGGATAGCTTCGAACTCGAGCAACTTGACCTCGACTTGCGCGACCGCGGGCTGGATGGGCGGTCTATCA‑GGCGCCTCGGTAGCGGCGGGCGA‑ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACTGG  >  NC_002947/2520928‑2521222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.