New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3248985 | 56 (0.900) | 3 (0.050) | 3/260 | NT | 5.4% | coding (605/1704 nt) | ureC | urease subunit alpha |
? | NC_002947 | = 3249023 | 50 (0.830) | coding (643/1704 nt) | ureC | urease subunit alpha |
AATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTGGCGGCCATCG > NC_002947/3248876‑3249170 | aaTGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGg < 2:18194‑M2/149‑2 (MQ=255) aaTGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTCCGCGAGCAGATTGCCGCAGGCGCTGTCGg < 8:92902‑M2/149‑2 (MQ=255) aTGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGgg < 6:194072‑M2/149‑3 (MQ=255) ccaccaCCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCt > 2:253168/1‑148 (MQ=255) ccaccaCCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTc < 5:200485/149‑1 (MQ=255) accaccTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTc > 1:379686/1‑147 (MQ=255) ccTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTg > 5:189199/1‑149 (MQ=255) gCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCAt > 5:27124/1‑149 (MQ=255) gCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCAt > 2:215549/1‑149 (MQ=255) cACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCAt < 4:5272/148‑1 (MQ=255) gCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATg > 3:206174/1‑146 (MQ=255) gCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATg > 3:201265/1‑146 (MQ=255) ggCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGTTGTCGGGCTCAAGCTGCATGAAGACTg < 1:18194/149‑1 (MQ=255) ggCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTg < 8:31033/149‑1 (MQ=255) ggCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTg < 3:306474/149‑1 (MQ=255) ccccTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTggg > 4:343346/1‑149 (MQ=255) cTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTgggccc < 6:189199/149‑4 (MQ=255) gTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTa < 1:215549/149‑1 (MQ=255) tACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTAc < 6:82804/149‑1 (MQ=255) aCCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACg > 3:210696/1‑149 (MQ=255) gcgcgcATGTTGCAGTCTGCCGACAGCTTGCCGATCAACTTCGGGCTGATGGGCAAGGGCAATGCGTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCATGCTGCATGAAGACTGGGGCTCTACGCca < 6:224736/147‑1 (MQ=255) cgcgcATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCcagca < 6:27124/149‑1 (MQ=255) cgcgcATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCcagc < 1:253168/148‑1 (MQ=255) gcATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGcc < 1:114350/149‑1 (MQ=255) cATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCa > 2:48961/1‑149 (MQ=255) aTGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCAt < 6:392975/149‑1 (MQ=255) gCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACt > 4:183873/1‑149 (MQ=255) cAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACt < 4:210696/148‑1 (MQ=255) ggCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGtt < 8:35852/149‑1 (MQ=255) gCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCcagcag < 2:363348/136‑1 (MQ=255) gCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCcagcag > 1:363348/1‑136 (MQ=255) ccGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTg > 5:90170/1‑149 (MQ=255) cGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTgg < 6:90170/149‑1 (MQ=255) gACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTggg > 7:138627/1‑149 (MQ=255) gCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGc < 4:201265/147‑1 (MQ=255) gCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGc < 4:206174/147‑1 (MQ=255) aCATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATg < 5:194072/149‑1 (MQ=255) cATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATgg < 1:48961/149‑1 (MQ=255) tgctgGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAg > 7:23564/1‑149 (MQ=255) ggcaagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCGATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGc < 7:92902/149‑1 (MQ=255) gcaagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCg < 5:301703/149‑1 (MQ=255) aagggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCCGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGAt < 4:268654/149‑1 (MQ=255) gggcaaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTc < 3:343346/149‑1 (MQ=255) caaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTcaca > 7:111815/1‑149 (MQ=255) aaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGa > 8:364458/1‑128 (MQ=255) aaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGa < 7:364458/128‑1 (MQ=255) aaTGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCacac < 5:82284/149‑1 (MQ=255) cTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaacatgcgcgcaaggtaccaggggccgggcgtgcaggtg < 7:326902‑M2/149‑103 (MQ=255) cTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGaca > 5:216005/1‑149 (MQ=255) tCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaacatgcgcgcaaggtaccaggggccgggcgtgcag < 2:273564‑M2/145‑100 (MQ=255) tCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaacatgcgcgcaaggtaccaggggccgggcgtgcag > 1:273564‑M2/1‑46 (MQ=255) cAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAAc < 1:304067/149‑1 (MQ=255) cTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCggg < 3:183873/149‑1 (MQ=255) aGATTGCCGCAGGCGCTGTCGGGCTCAATTTGCATGAAGACTGTGGCTCTACGCCAGCAGCGATCTACTGTTGGCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACTAGTCGGGCTGTATCGaa < 8:111815/149‑1 (MQ=255) aTTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGa > 2:234105/1‑149 (MQ=255) gCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATc < 6:350565/138‑1 (MQ=255) gCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATc > 5:350565/1‑138 (MQ=255) gcTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTggcg < 7:165206/147‑1 (MQ=255) gcTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTggcg > 8:165206/1‑147 (MQ=255) cGggccgcgaggcattgcccttgcccagcagcccgatgttgatcggcaagctgtcggcagcctgcaacatgcgcgcaaggtaccaggggccgggcgtgcaggtggtggcattggtgccagtggccggcccggttccaccgccgatgaac > 8:326902‑M2/1‑2 (MQ=255) | AATGCCACCACCTGCACGCCCGGCCCCTGGTACCTTGCGCGCATGTTGCAGGCTGCCGACAGCTTGCCGATCAACATCGGGCTGCTGGGCAAGGGCAATGCCTCGCGGCCAGACGCGCTGCGCGAGCAGATTGCCGCAGGCGCTGTCGGGCTCAAGCTGCATGAAGACTGGGGCTCTACGCCAGCAGCCATCGACTGTTGCCTGGGCGTGGCCGAGGAAATGGATATCCAGGTGGCGATTCACACCGACACCCTCAACGAGTCGGGCTGTATCGAAGACACGTTGGCGGCCATCG > NC_002947/3248876‑3249170 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |