New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1440000 =	NA (NA)	32 (1.090)	31/280	0.1	100%	intergenic (‑331/‑328)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1844451	0 (0.000)					coding (343/2754 nt)	gacS	sensor protein GacS

CGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1440146‑1440000 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTCGCACGACGGCACG  <  NC_002947/1844451‑1844308                                                                                                                                                                                                                                                                                                     CGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCGACCGCCTTTTCTTTTTCAAAATGTCAGCGGCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATC                                                                                                                                                 <  2:96368/148‑1   CACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGATGCGGAACTGAAGCCTTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGTGTGATCTC                                                                                                                                               <  6:50348/148‑1    ACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCC                                                                                                                                              <  8:104077/148‑1      ACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGCCAGCGCAGCCCGGAAGGGCTGGGTGATCTCCT                                                                                                                                             >  7:138963/1‑147      ACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCT                                                                                                                                             >  2:163415/1‑147      ACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACAGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGCAAGGGCTGGCTGATCTCCT                                                                                                                                             >  6:5878/1‑147            CCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGC                                                                                                                                        >  4:162901/1‑146                     GCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAA                                                                                                                              >  2:131827/1‑147                     GCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGGCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAAC                                                                                                                             <  8:119133/148‑1                       AAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGACGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGc                                                                                                                           >  3:116446/1‑147                           GGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCCGCGCAGTGGCAACGACGCC                                                                                                                       >  5:107682/1‑148                            GCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCA                                                                                                                      <  7:17709/148‑1                                             GCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCA                                                                                                     >  2:88826/1‑148                                                           CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAACGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACC                                                                                        <  3:91798/147‑1                                                            TTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCACCGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCAC                                                                                      >  7:128919/1‑148                                                              TTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCG                                                                                    >  8:23488/1‑148                                                                  AAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGAC                                                                                >  3:9416/1‑148                                                                                        ACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGG                                                          <  7:12589/148‑1                                                                                        ACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACAACCGCGACCTGGCCACCGACGCCGTGCCGG                                                          >  4:23356/1‑148                                                                                          TGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGC                                                         >  4:9477/1‑147                                                                                           GAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCC                                                        >  5:108860/1‑147                                                                                           GAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCG                                                                                              >  4:115514/1‑109                                                                                            AAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGG                                                                                             <  3:115514/109‑1                                                                                                  TACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGA                                                <  5:152473/148‑1                                                                                                   ACACCTCCTGGTGGCTCCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGAAGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAG                                               <  7:55808/148‑1                                                                                                         CATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGCCGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTG                                         >  8:42894/1‑148                                                                                                          ATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGC                                        >  1:118343/1‑148                                                                                                            GTTTGCTGCGCGCCAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCCGTGGCCCCGCCGCCCCCCGCGACCTGATGCCAGTTTTCGGCCACCCCCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTG                                      >  7:30894/1‑148                                                                                                              TTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGG                                     <  3:41346/147‑1                                                                                                                 cgGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTGTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTG                                 <  1:70315/146‑1                                                                                                                     GCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGG                               <  1:131827/146‑1                                                                                                                       gaccggGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGA                           <  6:107682/142‑1                                                                                                                       GACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGT                              >  2:14622/1‑145                                                                                                                           GCGCAGCCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATC                       <  5:137325/148‑1                                                                                                                                 CCCGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACAACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTG                 >  5:152660/1‑148                                                                                                                                   CGGAAGGGCTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTC               <  1:168860/148‑1                                                                                                                                           CTGGGTGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTCGCACGACG       <  3:162901/148‑1                                                                                                                                                TGATCTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGTTGTCGCACGACGGCACG  >  2:15735/1‑148                                                                                                                                                                                                                                                                                                     CGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATctcct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1440146‑1440000 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTCCTGCAGCGCAGTGGCAACGACGCCACCCGCTACCTGATGCCAGTTTTCGGCCACCACCGCGACCTGGCCACCGACGCCGTGCCGGCCGAAGCCGAGCGCCTGCTGGGCTGGGTAGAGATCGAGCTGTCGCACGACGGCACG  <  NC_002947/1844451‑1844308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.