New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1440000 =	NA (NA)	32 (1.090)	31/280	0.1	100%	intergenic (‑331/‑328)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 1844451	0 (0.000)					coding (343/2754 nt)	gacS	sensor protein GacS

GTGGTAAGCCGCAAAGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTT  >  NC_002947/1439853‑1440129                                                                                                                                                    |                                                                                                                                  gTGGTAAGCCGCAAAGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGgaga                                                                                                                                   <  6:34865/148‑1 (MQ=255)                 cGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCg                                                                                                                   <  3:45707/148‑1 (MQ=255)                              tCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTcg                                                                                                      >  2:47947/1‑148 (MQ=255)                                  aGCCATACCGGTTAAGGGTTTGAGAGATGCAGTGCTAGTGCGGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCgca                                                                                                  <  7:27724/148‑1 (MQ=255)                                               aaGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGGAGGAGATCTCCCAGCCCTTCCGGGCTGCGCTGTCGCGCCGCAAACATGAGgt                                                                                     >  4:35843/1‑148 (MQ=255)                                                   gTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTcgcg                                                                                                    >  7:109272/1‑129 (MQ=255)                                                    tttGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCgcgc                                                                                                   <  8:109272/129‑1 (MQ=255)                                                         gagaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCt                                                                             >  7:155982/1‑146 (MQ=255)                                                           gaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTCCGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAg                                                                         <  5:157860/148‑1 (MQ=255)                                                              gCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTc                                                                      <  1:115324/148‑1 (MQ=255)                                                               cactGCGAGTGCCGGCCCGTTCGCGTGTGAACCCGCGCCTACAGCTACGGCGCAGAAATCGACCTCTGTGGGGGCCCTGTCGGAGATCCCCCAGCCCTTCCGGGCTGCGCTGTAGCGCAGCAAACATGAGGTGTACGGCGTCAGTTcc                                                                     <  8:65802/145‑1 (MQ=21)                                                                aGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTcc                                                                     <  8:97085/147‑1 (MQ=255)                                                                aGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTcc                                                                     <  2:69529/147‑1 (MQ=255)                                                                 gTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGc                                                                   <  7:129827/148‑1 (MQ=255)                                                                  tGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCa                                                                  <  1:85286/148‑1 (MQ=255)                                                                            ggCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTg                                                         >  8:119723/1‑147 (MQ=255)                                                                                             aCCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaaa                                       <  8:101158/148‑1 (MQ=255)                                                                                              cccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCGTCAGTTCCGCAGCGCCGCAGACATTTTGAaaaagaaaag                                      >  3:18241/1‑148 (MQ=255)                                                                                               ccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCCAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAgg                                     >  3:141249/1‑148 (MQ=255)                                                                                               ccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGCCGCTGACATTTTGAAAAAGAAAAgg                                     >  6:95133/1‑148 (MQ=255)                                                                                                     cTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGTCCTGTAGGAGATCCCCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCCAACAAGAGGTGTTCGGCTTCAGTTCCGCAGCGCCGCGGACATTTTGAAAAAGAAAAGGCGGttt                               >  5:109647/1‑147 (MQ=18)                                                                                                                gcgcAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAggg                    >  2:56699/1‑148 (MQ=255)                                                                                                                  gcAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGcc                  <  8:84432/148‑1 (MQ=255)                                                                                                                           gAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCtt         >  5:34094/1‑148 (MQ=40)                                                                                                                                    gggggCCCTGTAGGAGAGCACCCAGCCCTTCCCGGCTGCGCTGTCGCGCAGCAAACATGACGTGTCCGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCtt   <  3:92563/145‑1 (MQ=255)                                                                                                                                    gggggCCCGGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGACGTGTACGGCTTCAGGTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCttt  <  3:104687/146‑1 (MQ=12)                                                                                                                                                    |                                                                                                                                  GTGGTAAGCCGCAAAGCGTGGGGATAGGCTCAAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTT  >  NC_002947/1439853‑1440129

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.