New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5545321 =	NA (NA)	39 (0.570)	35/282	0.8	100%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	0 (0.000)					coding (19/774 nt)	PP_4939	hypothetical protein

ATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5545455‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATG  <  NC_002947/5621245‑5621107                                                                                                                                                                                                                                                                                     ATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACG                                                                                                                                 <  2:251047/147‑1     CATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCG                                                                                                                             <  8:125484/147‑1              TAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCA                                                                                                                    <  7:359131/147‑1                  CCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGAAGTTTTCGCTA‑GAAAAGACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTG                                                                                                                >  1:122729/1‑147                    CTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTG                                                                                                              >  7:33013/1‑147                    CTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTG                                                                                                              >  8:84413/1‑147                     TGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGG                                                                                                             <  6:149660/147‑1                       TCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTG                                                                                                              >  1:325643/1‑144                       TCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTG                                                                                                              <  2:325643/144‑1                          GCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGG                                                                                                         <  1:108652/146‑1                                 TTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGTGGGAATG‑TTTTAACAATATGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCT                                                                                                 <  1:319422/147‑1                                       TGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTC                                                                                             >  4:296778/1‑145                                            ACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGAGGTTCGATCTGCTCAAAGACA                                                                                      >  2:300324/1‑147                                              GTATAGAAGAGTGAACACTTCGCCGCCATAGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACC                                                                                    >  1:231115/1‑147                                                     AGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGA                                                                             <  7:84413/147‑1                                                       AGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGT                                                                           >  8:114247/1‑147                                                         TGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTT                                                                         <  8:218426/147‑1                                                         TGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTT                                                                         >  2:65980/1‑147                                                          GAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTT                                                                         >  7:258629/1‑146                                                            ACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCG                                                                       >  6:272695/1‑146                                                                 TCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGCCCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGat                                                                 >  6:68478/1‑145                                                                  CGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTA                                                                <  7:114247/147‑1                                                                   GCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTA                                                                <  1:205341/146‑1                                                                    CCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACA                                                              <  3:379205/147‑1                                                                      GCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCCCGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACCCCCTTGAGAGTTTCGATCGCTACAAC                                                            >  6:171916/1‑147                                                                            GACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCG                                                      >  1:13635/1‑147                                                                              CCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGC                                                     >  8:86381/1‑146                                                                                            TTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTAT                                      <  8:258629/147‑1                                                                                             TTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTAT                                      >  1:349219/1‑146                                                                                              TTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATT                                     <  8:33013/146‑1                                                                                               TTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATATAAGTGACGTCACGCTCGTCGTGACCAGTTGTTGGCGGTTCGATCTGCTCCAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTC                                    <  1:300324/146‑1                                                                                                         AAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTTAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGA                            <  5:272695/145‑1                                                                                                           AGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGAC                        <  2:231115/147‑1                                                                                                                  TGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCG                 <  8:212234/147‑1                                                                                                                          CTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCT         >  8:292142/1‑147                                                                                                                           TTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTGCAACACCGCGCCCATTCGCGAGGTATTCCTCAACGAATACTCTGGCGACGATGCTG        >  6:372179/1‑147                                                                                                                           TTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGATGTGGGCGGTTAGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACAC                                                          >  2:258481/1‑97                                                                                                                            TTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGT       >  5:167635/1‑147                                                                                                                                 TTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATG  >  1:109886/1‑147                                                                                                                                                                                                                                                                                     ATGGCATCGGCGTTAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTA‑GAAAGAACAGTGGGTTATCTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5545455‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATG  <  NC_002947/5621245‑5621107

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.