New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5545321 = | NA (NA) | 39 (0.570) | 35/282 | 0.8 | 100% | intergenic (‑461/+416) | rpsF/rlmB | 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB |
? | NC_002947 | = 5621245 | 0 (0.000) | coding (19/774 nt) | PP_4939 | hypothetical protein |
CCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCA > NC_002947/5545176‑5545463 | ccTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGtctt > 3:374334/1‑146 (MQ=11) tGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGtcttct > 4:204820/1‑146 (MQ=32) gCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTa > 3:151412/1‑146 (MQ=32) cGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATc > 6:79029/1‑146 (MQ=34) gTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATcaa > 1:209664/1‑146 (MQ=35) cTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATcaaaca < 6:142825/147‑1 (MQ=38) cttcGAACTCCTCAAGACCTTGTTCAACATAAGACTGCTTCTTGGTTAACAGGTTGTAAACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGAAGCTGGTATCCATTCGAGTAAGTCTTCTATCAAACAAAATATAACCCa > 5:284727/1‑147 (MQ=14) ttcGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCAc < 4:335232/147‑1 (MQ=255) tcGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGATGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACt > 8:11713/1‑147 (MQ=255) gAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTg > 5:266148/1‑146 (MQ=255) aCTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGttc < 5:183936/147‑1 (MQ=255) tcAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGttcttt < 3:242848/145‑1 (MQ=255) aGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACAGCAGACGTGGCAACTGATGCGCAGTGGCTTTGATGGCGGAGCTGGTATGCATTCGAGTCAGTGTTGTATAAAAAAAAAGGTAACCCACTGTTCTTTCTAg > 1:85887/1‑146 (MQ=17) aGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTATGAAGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAg > 3:327479/1‑146 (MQ=255) ttGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaa > 2:249590/1‑146 (MQ=255) ttCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTTGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaaaa < 5:79029/146‑1 (MQ=255) tCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaaaaa < 2:209664/146‑1 (MQ=255) tCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGaaaaaaa < 4:151412/146‑1 (MQ=255) tCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAAc < 6:101755/147‑1 (MQ=255) cAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCTCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAAc < 7:309162/146‑1 (MQ=255) aaCATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAg > 8:130209/1‑147 (MQ=255) cTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCggg < 4:99566/147‑1 (MQ=255) tGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCgggg < 3:204820/147‑1 (MQ=255) tGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCgggg < 1:72495/147‑1 (MQ=255) ttGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCaa < 8:229491/145‑1 (MQ=255) aGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAg < 6:252428/147‑1 (MQ=255) ttGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTTTCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgtgt < 3:199182/147‑1 (MQ=255) ttGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAgtgt > 8:87851/1‑147 (MQ=255) cacCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCAc < 6:266148/146‑1 (MQ=255) ccAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCActct < 1:142263/147‑1 (MQ=255) cAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACtctt < 1:249590/147‑1 (MQ=255) aCGTGCCAACTGATGCGCAGTGGCTTTGATGGCACAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCta < 3:186848/147‑1 (MQ=255) cAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCTAAAAAAACAGGCGCGCGGGCTCAATGGCGGCGATGTGTTCACTCTTCTATACGTg > 2:39129/1‑147 (MQ=255) aTGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTcaca > 1:282388/1‑147 (MQ=255) tGCGCATTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTcaca < 7:130209/146‑1 (MQ=255) tGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTcaca > 2:8865/1‑146 (MQ=255) gcAGTGGCTTTGATGTCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCaa < 8:32783/147‑1 (MQ=255) gcAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCa < 4:327479/146‑1 (MQ=255) tGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCtg < 2:56786/147‑1 (MQ=255) gggCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCtg < 4:277204/146‑1 (MQ=255) ggCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCtgt > 1:347652/1‑147 (MQ=255) tttGATGGCGCAGCTGGTATCCATTCGAGTCAGTCATCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGcc < 7:308824/147‑1 (MQ=255) tGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCg > 4:8257/1‑146 (MQ=255) tGGCGCAGCTGGTAGCCCTTCGACTCAGGCGTCTATCCAACAAAAGATAACCCACTCTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAg < 6:286014/147‑1 (MQ=14) cgcAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAggg < 4:374334/146‑1 (MQ=255) cgcAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGa > 2:238450/1‑147 (MQ=255) tATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGc < 5:62351/145‑1 (MQ=255) tATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCg > 7:24103/1‑147 (MQ=255) aTCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGCGGCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCg < 1:39129/146‑1 (MQ=255) aTTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGcc > 5:352735/1‑147 (MQ=39) gAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCAtt < 7:11713/146‑1 (MQ=35) agtcagtcTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCAttt < 1:8865/146‑1 (MQ=35) tcagtcTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTggg < 6:352735/147‑1 (MQ=33) tcagtcTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTggg > 2:96999/1‑147 (MQ=33) gtcTTCTATCTAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCa > 4:1966/1‑147 (MQ=14) | CCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCTTTGATGGCGCAGCTGGTATCCATTCGAGTCAGTCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCA > NC_002947/5545176‑5545463 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |