New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1780066	34 (0.490)	13 (0.200)	11/272	2.6	29.8%	intergenic (+25/+81)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	1780129 =	29 (0.440)					intergenic (+88/+18)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase

GCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGC  >  NC_002947/1779925‑1780209                                                                                                                                              |                                                                                                                                                 gcgcAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgccc                                                                                                                                             <  6:280579‑M1/147‑6 (MQ=255)      gCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCGGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaa                                                                                                                                        <  7:336152‑M1/147‑11 (MQ=255)        ggTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCca                                                                                                                                      <  8:111868/147‑1 (MQ=255)          ttGGTGCTGGAAAACCTGCATCGTCAGCACCTGGTGGGGGAGGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCATGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTccgtga                                                                                                                                    <  8:252164/147‑5 (MQ=255)          ttGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCcaca                                                                                                                                    <  1:166667/147‑1 (MQ=255)          ttGGAGCTGTACAACCTGCATCGTCAGCACCTGGGGGGGGATGAGGGGGTGCGGCAAGTACTGGGGGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCGCCcaca                                                                                                                                    <  8:197372/147‑1 (MQ=255)           tGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTACCCCAg                                                                                                                                   >  3:367251/1‑147 (MQ=255)                cTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttga                                                                                                                                >  5:156911‑M1/1‑127 (MQ=255)                 tGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGCCCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTa                                                                                                                                >  4:242404/1‑144 (MQ=255)                 tGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTa                                                                                                                                >  4:247254/1‑144 (MQ=255)                 tGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTa                                                                                                                                <  3:247254/144‑1 (MQ=255)                 tGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGCCCCTTCGCGGGCGCGCCCGCTCCCACAGGTa                                                                                                                                <  3:242404/144‑1 (MQ=255)                   tACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTActgcg                                                                                                                           >  5:175631/1‑147 (MQ=255)                    aCAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTActgcg                                                                                                                           <  3:104070/146‑1 (MQ=255)                         cTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACtgcgctgcgc                                                                                                                     <  3:229845/147‑1 (MQ=255)                         cTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACtgcgctgcgc                                                                                                                     >  5:344822/1‑147 (MQ=255)                           gCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTACCACAGGTACTgcgcggcgct                                                                                                                    >  3:151963/1‑146 (MQ=255)                              tCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGaa                                                                                                                <  6:199983/147‑1 (MQ=255)                               cGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGTCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGaaa                                                                                                               <  5:120934/147‑1 (MQ=255)                                  cAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCa                                                                                                            >  5:171827/1‑147 (MQ=255)                                    gCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAgc                                                                                                          <  8:311747/147‑1 (MQ=255)                                      aCCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgc                                                                                                         >  5:284296‑M1/1‑105 (MQ=255)                                      aCCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAAACAgacc                                                                                                        >  5:349411/1‑144 (MQ=255)                                        cTGGTGGGGGATGCGGTGGTGCGGCAAGTACGGGGGGCGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑Tg                                                                                                     <  8:263451/147‑1 (MQ=255)                                        cTGGTGGGGGATGAGGTGGTGCAGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGGACTGGCCAGAGCGTGAAATTAGCGC‑t                                                                                                      >  3:101809/1‑146 (MQ=255)                                         tggtggGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaat                                                                                                     <  6:284296‑M1/147‑46 (MQ=255)                                              ggggATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGACATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaa                                                                                                      <  8:138276‑M1/141‑45 (MQ=255)                                              ggggATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGACATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaa                                                                                                      >  7:138276‑M1/1‑97 (MQ=255)                                                ggATGTGGTGGTGCGGCATTTACTGGGTGCCGGTGATATGTGTGAGGCTAACCTGGGTTCAGTCAAGTAGTCCCTATCATGGCCCTTCACGGGCGCGCGGGCTCCGACAGGTACTGCGCTGCGCTTGATATCAGCGC‑TGTACCggtg                                                                                             <  2:41654/147‑1 (MQ=255)                                                 gATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCTC‑TGTACCTGTgg                                                                                            <  6:201351/147‑1 (MQ=255)                                                     aGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTTCGCTTCGCGTGGAATGAGCGC‑TGTAACggtgaaatc                                                                                        >  1:139333/1‑142 (MQ=255)                                                                cAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctc                                                                                               >  8:254714‑M1/1‑79 (MQ=255)                                                                cAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctc                                                                                               <  7:254714‑M1/130‑52 (MQ=255)                                                                  aGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTACCACAGGTACTGCGCTGCGGTTGGAATCAGGGC‑TGTTCCTGGGGGAGCGGGCGTGCCcgc                                                                            >  7:40656/1‑146 (MQ=255)                                                                     aCTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCACCCAAAGGGACAGCCCGGCCCGTGTAATGA‑CGCGGGTACCATTGGGCGCGGGGGTGCCCGCGAAg                                                                        >  2:135511/1‑147 (MQ=255)                                                                          gTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTAAAGCGCTGCGCTTGAAATCAGGGC‑TGTACCGGGGGGAGCGGGGGTGCCCGCGAAgggggg                                                                   >  8:38867/1‑145 (MQ=38)                                                                                  gATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCg                                                           >  5:374671/1‑147 (MQ=255)                                                                                           gagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGAGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCa                                                   >  8:46981/1‑146 (MQ=255)                                                                                               cGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCAtgcccgcgaaggggttgatcagc                                                                                                                           >  6:206798‑M1/1‑48 (MQ=255)                                                                                               cGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCAtgcccgcgaaggggttgatcagc                                                                                                                           <  5:206798‑M1/71‑24 (MQ=255)                                                                                                                      aCCTTAGCAAGGCCCTGGGCGGGCGGGCCCGCTCCCACTGGTACTGGGGTGCTGTTTAATACAGCGT‑TTTACGGGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCtt                        <  6:171827/146‑1 (MQ=255)                                                                                                                       cccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATGAGCGC‑TGTTCCTGTGGGAGCGGGGGTGCCCGCGAAGGGGTTGATCCGCGGGTTTGCAGGAAGGCGCGAATGGGCTCCGCCCCtg                        >  6:381804/1‑144 (MQ=38)                                                                                                                         cTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcgagcggttttgcaggaaggcgcgaatgcgctccgccgcttcgatg                                                                                 >  1:268452‑M1/1‑22 (MQ=255)                                                                                                                         cTATCAAGGCCCTTCGCGGGCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctccgccgcttcgatg                                                                                  <  2:268452‑M1/86‑65 (MQ=255)                                                                                                                                ggCCCTTCGCGGGCGCGCCCGCTACCACAGGTAATGCCCTGGGGTTGAAATAAGCCC‑TGTACCGGTGGGAGCGGGGCTGCCCGCGAAGGGGGTTAACAGCGGTTTTGCAGGAATGCGCGAATGCGCTACCCCCCGTCGATGCAttag             >  8:103252/1‑145 (MQ=255)                                                                                                                                       cgcgGGCGCGCCCGCTCCCACCGGTAAAGCGCGGTGGGTGGAATAACCGC‑TGTTCCGGTGGGAGCGGGGGTGCCCGCGAAGGGGGTGGTAACCGGTTTTGGAGGCAGGCGCGAATGCGCTCCGCCCCGTCGATGGAGTAGGCCaccc      >  2:105864/1‑144 (MQ=255)                                                                                                                                        gcgGGCGCGCCCGCTCCCACCGGTACTGCGCGGCGTTTTAAATCAGCGT‑TGAACGTGTGGGCGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCgg     <  6:344822/147‑1 (MQ=255)                                                                                                                                            gCGtgcccgcgaaggggttgatcagcggttttgcaggaaggcgcgaatgcgctccgccgcttcgatgcattcggacagcggtgcaaccagtgccatgcgcacgcgcccggcacccgggttcaccccatccacttcacgcgacaggta  >  7:8395‑M1/1‑3 (MQ=255)                                                                                                                                              |                                                                                                                                                 GCGCAGCGGTTGGAGCTGTACAACCTGCATCGTCAGCACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGC  >  NC_002947/1779925‑1780209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.