| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1780066 | 34 (0.490) | 13 (0.200) | 11/272 | 2.6 | 29.8% | intergenic (+25/+81) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | 1780129 = | 29 (0.440) | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
CAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTA > NC_002947/1779988‑1780272 | gcgcagcggttggagctgtacaacctgcatcgtcagcacctggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGccc < 6:280579‑M2/5‑1 (MQ=255) aGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTACCACAGGTACTGCGCTGCGGTTGGAATCAGGGC‑TGTTCCTGGGGGAGCGGGCGTGCCcgc > 7:40656/1‑146 (MQ=255) gcggttggagctgtacaacctgcatcgtcagcacctggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgaaccggggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGaa < 7:336152‑M2/10‑1 (MQ=255) aCTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCACCCAAAGGGACAGCCCGGCCCGTGTAATGA‑CGCGGGTACCATTGGGCGCGGGGGTGCCCGCGAAg > 2:135511/1‑147 (MQ=255) gTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTAAAGCGCTGCGCTTGAAATCAGGGC‑TGTACCGGGGGGAGCGGGGGTGCCCGCGAAgggggg > 8:38867/1‑145 (MQ=38) ctgtacaacctgcatcgtcagcacctggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGa > 5:156911‑M2/128‑145 (MQ=255) gATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCg > 5:374671/1‑147 (MQ=255) gagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGAGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCa > 8:46981/1‑146 (MQ=255) acctggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGgcgc > 5:284296‑M2/106‑146 (MQ=255) tggtgggggatgaggtggtgcggcaagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAAt < 6:284296‑M2/45‑1 (MQ=255) ggggatgaggtggtgcggcaagtactgggtgagctggacatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGaa > 7:138276‑M2/98‑141 (MQ=255) ggggatgaggtggtgcggcaagtactgggtgagctggacatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGaa < 8:138276‑M2/44‑1 (MQ=255) aCCTTAGCAAGGCCCTGGGCGGGCGGGCCCGCTCCCACTGGTACTGGGGTGCTGTTTAATACAGCGT‑TTTACGGGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCtt < 6:171827/146‑1 (MQ=255) cccTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATGAGCGC‑TGTTCCTGTGGGAGCGGGGGTGCCCGCGAAGGGGTTGATC‑CGCGGGTTTGCAGGAAGGCGCGAATGGGCTCCGCCCCtg > 6:381804/1‑144 (MQ=38) caagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTc < 7:254714‑M2/51‑1 (MQ=255) caagtactgggtgagctggatatgagtgaggcgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTc > 8:254714‑M2/80‑130 (MQ=255) ggCCCTTCGCGGGCGCGCCCGCTACCACAGGTAATGCCCTGGGGTTGAAATAAGCCC‑TGTACCGGTGGGAGCGGGGCTGCCCGCGAAGGGGGTTAAC‑AGCGGTTTTGCAGGAATGCGCGAATGCGCTACCCCCCGTCGATGCAttag > 8:103252/1‑145 (MQ=255) cgcgGGCGCGCCCGCTCCCACCGGTAAAGCGCGGTGGGTGGAATAACCGC‑TGTTCCGGTGGGAGCGGGGGTGCCCGCGAAGGGGGTGGTA‑ACCGGTTTTGGAGGCAGGCGCGAATGCGCTCCGCCCCGTCGATGGAGTAGGCCaccc > 2:105864/1‑144 (MQ=255) gcgGGCGCGCCCGCTCCCACCGGTACTGCGCGGCGTTTTAAATCAGCGT‑TGAACGTGTGGGCGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCgg < 6:344822/147‑1 (MQ=255) ccGCTCCCCGCGGTCCGGCGCTGCGCTTCAAACCCGCGC‑TGTACGGGTGGGCGCGGGCGGGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGt < 7:103252/147‑1 (MQ=255) gCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGC‑AGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTg > 3:377860/1‑146 (MQ=18) cacaGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgc > 4:317441/1‑147 (MQ=255) caGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATgcgc > 7:194237/1‑147 (MQ=255) ggTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAc > 4:181297/1‑147 (MQ=255) cgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcaTGCCCGCGAAGGGGTTGATC‑AGc < 5:206798‑M2/23‑1 (MQ=255) cgaacctgggttcagtcaagtagaccctatcaaggcccttcgcgggcaTGCCCGCGAAGGGGTTGATC‑AGc > 6:206798‑M2/49‑71 (MQ=255) tACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCAcgc > 1:76172/1‑147 (MQ=255) tgcgctgcgcTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGcc < 3:317441/147‑1 (MQ=255) gctgcgctTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCCTTCGGCCCGCGGTGCAACCAGTGCCATGCGCACGCGCCCg > 4:322885/1‑146 (MQ=255) tgcgctTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCa < 7:46981/147‑1 (MQ=255) gcgctTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCa > 4:49915/1‑146 (MQ=255) gcgctTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCa > 4:54848/1‑146 (MQ=255) gctTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCa < 3:54848/144‑1 (MQ=255) gctTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCa < 3:49915/144‑1 (MQ=255) ctTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCg > 1:270867/1‑147 (MQ=255) aTCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTc < 2:270867/146‑1 (MQ=255) ctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATCGAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATg > 1:268452‑M2/23‑87 (MQ=255) ctatcaaggcccttcgcgggcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATg < 2:268452‑M2/64‑1 (MQ=255) cTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGACCGCGGGGCAACCAGTGCCATGCGCACGCGCCCGGCCCCCGGGTTCACCCCTGCCACTTc > 8:245419/1‑147 (MQ=255) gtgGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGACCGGCACCCGGGTTCACCCCATCCACTTCAc > 6:283771/1‑147 (MQ=255) tgGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcg > 3:220185/1‑147 (MQ=255) aGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCGGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCAcgcg > 4:124952/1‑145 (MQ=255) gcgTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGACAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTa > 7:8395‑M2/4‑147 (MQ=255) | CAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGC‑TGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATC‑AGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAGGTA > NC_002947/1779988‑1780272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |