| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 3,788,572 | Δ23 bp | coding (41‑63/1392 nt) | PP_3350 ← | hypothetical protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3788571 | 2 (0.030) | 49 (0.720) | 40/284 | 0.6 | 96.1% | coding (64/1392 nt) | PP_3350 | hypothetical protein |
| ? | NC_002947 | 3788595 = | 2 (0.030) | coding (40/1392 nt) | PP_3350 | hypothetical protein | |||||
CCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATG > NC_002947/3788425‑3788715 | ccAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTA < 7:68842‑M1/147‑1 (MQ=255)ccAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTA < 7:95593‑M1/147‑1 (MQ=255) cAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTA > 4:285606‑M1/1‑146 (MQ=255) tGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggca > 7:73235‑M1/1‑135 (MQ=255) ccaGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCCAGCGGGCTGGCCGC‑GTAgcatgaggggcag > 6:275767‑M1/2‑133 (MQ=255) aGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggca < 3:309334‑M1/147‑17 (MQ=255) tGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcatacccc > 1:77803‑M1/1‑125 (MQ=255) aGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgtt > 2:319659‑M1/1‑121 (MQ=255) gcgcAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttca > 7:219770‑M1/1‑120 (MQ=255) gcgcAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttca > 8:205049‑M1/1‑120 (MQ=255) gcAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaac > 6:369624‑M1/1‑118 (MQ=255) ggCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTAGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggc < 8:241525‑M1/147‑33 (MQ=255) cATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCCAGCGGGCTGGCCGC‑GTAGGCGGAATGGCCCAGCGAAAGCCCCATGAGGggca > 7:64547/1‑147 (MQ=255) aTCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCCTAGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttg > 1:106137‑M1/1‑112 (MQ=255) aaaGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcat < 1:105496‑M1/147‑41 (MQ=255) aaGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatca > 1:368074‑M1/1‑106 (MQ=255) cAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatt > 4:304327‑M1/1‑100 (MQ=255) cTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttccctt > 7:235977‑M1/1‑93 (MQ=255) cTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGAGGGCTGGCCGC‑GTAcaatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttc > 6:100422‑M1/1‑93 (MQ=255) ggggCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtt < 8:313142‑M1/147‑62 (MQ=255) tcgAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttata > 1:180598‑M1/1‑80 (MQ=255) cgAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataa > 4:117121‑M1/1‑79 (MQ=255) gagaAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcgtaccccgttcaacggcttgatcatcagaatttcgcttcacttgtttttataat > 6:364833‑M1/1‑78 (MQ=255) gCGGTAGTCCTCGATCC‑AGCGAGGGACCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacgtcttgatcatcagaatttcccttcacttgtttttataattgttct < 4:142026‑M1/147‑76 (MQ=255) cGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTTGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttctt < 5:166991‑M1/147‑77 (MQ=255) ggTAGTCCTCGATCC‑ATCGAGGGGCCCCTGGCCTCCCCGGCCGGCTATCTTCAAGCGGGCTGGCCGC‑GTAacatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttctta < 8:27400‑M1/147‑78 (MQ=255) ccTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaact > 4:125340‑M1/1‑64 (MQ=255) tCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactgg < 8:219770‑M1/147‑86 (MQ=255) tCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactgg < 2:180598‑M1/147‑86 (MQ=255) tCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactgg > 2:300266‑M1/1‑62 (MQ=255) tCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactgg > 8:197828‑M1/1‑62 (MQ=255) tCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcactgggttttataattgttcttacaaactgg > 6:348767‑M1/1‑62 (MQ=255) aTCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactgga < 2:77803‑M1/145‑87 (MQ=255) gCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactct < 3:117121‑M1/147‑94 (MQ=255) cGAGGGGCCCCTGGCCACCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑CTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcgcgtcacgtgattttataattgttcttacaaactggataactctg > 5:286922‑M1/1‑53 (MQ=255) gggCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaa < 3:285606‑M1/147‑99 (MQ=255) gggCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaa < 3:125340‑M1/147‑99 (MQ=255) gggCCCCTCGCCTCCCCGTCCGGCTCTCTTCAAGCGTGCTGTCCGC‑GTAGGCGGAATGGCACAGCGAAAGCACCATGCGGGGCAGGCATACCCCGTTCAACGGCTTGCTCATCAGAATTTCCCTTCACTTGTTTTTATAATTGtt < 8:64547/145‑1 (MQ=255) ggCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCAGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaa > 4:193153‑M1/1‑48 (MQ=255) ccTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaa < 4:222116‑M1/119‑81 (MQ=255) ccTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaa < 4:217214‑M1/119‑81 (MQ=255) ccTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaa > 3:222116‑M1/1‑39 (MQ=255) ccTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaa > 3:217214‑M1/1‑39 (MQ=255) cTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGCAGTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttt > 1:258317‑M1/1‑39 (MQ=255) cTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttt < 1:183779‑M1/146‑109 (MQ=255) ccggccggCTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgt < 7:205049‑M1/145‑112 (MQ=255) cggccggcTCTCTTCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcatacgccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgttaa < 1:319659‑M1/147‑115 (MQ=255) ggcTCTCTTCAAGCGGGCTGGCCGC‑GTActatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgttaaccata > 3:155806‑M1/1‑28 (MQ=255) ctctctTCAAGCGGGCTGGCCGC‑GTAccatgagggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgttaaccatat > 1:258686‑M1/1‑26 (MQ=255) ttCAAGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgttaaccatatgcgcc > 6:223217‑M1/1‑21 (MQ=255) aaGCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgttaaccatatgcgccgt < 2:368074‑M1/145‑128 (MQ=255) gCGGGCTGGCCGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgttaaccatatgcgccgtcaat < 3:193153‑M1/147‑132 (MQ=255) ccGC‑GTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggataactctgttaacgattatttttgttaaccatatgcgccgtcaatagcgtttt < 5:369624‑M1/146‑140 (MQ=255) gTAccatgaggggcaggcataccccgttcaacggcttgatcatcagaatttcccttcacttgtttttataattgttcttacaaactggatatctctgttaacgattatttttgttaaccatatgcgccgtcaatagcgttttgtcgt < 1:300266‑M1/147‑145 (MQ=255) | CCAGGCCGACTCTGACAGCCGATGGTAGCGCAGGCCATCGAAAGGGGCAGTGGCCTTGGCGGGGTCGTCGAGAAAGCGGTAGTCCTCGATCC‑AGCGAGGGGCCCCTGGCCTCCCCGGCCGGCTCTCTTCAAGCGGGCTGGCCGC‑GTAGGCGGAATGGCACAGCGAAAGCACCATGAGGGGCAGGCATACCCCGTTCAACGGCTTGATCATCAGAATTTCCCTTCACTTGTTTTTATAATTGTTCTTACAAACTGGATAACTCTGTTAACGATTATTTTTGTTAACCATATG > NC_002947/3788425‑3788715 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |