New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5545321 =	NA (NA)	40 (0.550)	36/274	0.9	100%	intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
	?	NC_002947	= 5621245	0 (0.000)					coding (19/774 nt)	PP_4939	hypothetical protein

TAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5545442‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATGCCGCTG  <  NC_002947/5621245‑5621101                                                                                                                                                                                                                                                                             TAATCCCTGTCGGCACAGCTTGCTGTAACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAG                                                                                                                         >  2:116486/1‑148    TCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGT                                                                                                                        <  6:343231/146‑1       CTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGG                                                                                                                   <  1:414577/148‑1         GTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGC                                                                                                                 >  2:53086/1‑148                      GCTGTAACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTG                                                                                                      <  1:116486/146‑1                       CTGTGACCACGTATAGAAGAGTGATCACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTAGCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTG                                                                                                      <  6:179807/145‑1                        TGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTC                                                                                                   <  3:141807/147‑1                        TGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTC                                                                                                   <  3:148211/147‑1                        TGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCT                                                                                                    >  4:112060/1‑146                           GACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCA                                                                                                  >  7:93114/1‑145                             CCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGA                                                                                              >  2:386916/1‑147                                    TAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCT                                                                                        >  4:215125/1‑146                                        AGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGA                                                                                   >  5:273688/1‑147                                        AGAGTGAACACTTCGCCGCCATTGACCCCGAGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACAATTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGA                                                                                   >  3:309761/1‑147                                         GAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAG                                                                                  <  6:383412/147‑1                                           GTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTT                                                                                <  5:327281/147‑1                                           GTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGC                                                                                                                 <  7:401147/114‑1                                           GTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGC                                                                                                                 >  8:401147/1‑114                                                 ACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGGTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCG                                                                         >  2:349643/1‑148                                                 ACTTCGCCGCCAGTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATC                                                                          <  6:371962/147‑1                                                    TCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTA                                                                      >  1:146283/1‑148                                                    TCGCAGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTATCGATCGCTA                                                                      >  1:166263/1‑148                                                      GCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTA                                                                      >  6:74930/1‑146                                                      GCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCT                                                                       <  3:112060/145‑1                                                         GCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAAC                                                                  <  3:215125/147‑1                                                          CCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACAC                                                                <  1:53086/148‑1                                                                   CCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCAT                                                       >  7:316887/1‑148                                                                     GCGCGGCTGTTTTTTTCGCTAGAAAGAAGAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATT                                                      <  4:309761/147‑1                                                                            TGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCGGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATGGCTACAACACCGCGCCCATGCGCGAGG                                               >  8:72454/1‑147                                                                               TTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTAT                                            >  2:386800/1‑147                                                                                    TCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATC                                       >  4:99182/1‑147                                                                                           AAAGAACAGTGGGTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAA                                 <  6:374495/146‑1                                                                                             AGAACAGTGTGTTATCTTTTGTTTGATATAAGTGATGTCACGCTCGTCGTGACGAGTTGTGGGCGGTTCGATCTGCTCAAAGACAACCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACT                             <  2:166263/148‑1                                                                                                       GTTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGA                   >  2:164713/1‑148                                                                                                        TTATCTTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGA                   <  5:74930/147‑1                                                                                                             TTTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCT               <  7:399388/146‑1                                                                                                              TTTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCACATTCGCGAGGTATTCATCACCGAAGACTCTGCCTACGATGCTG              >  8:399388/1‑146                                                                                                               TTGTTTGATAGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTG            <  1:386916/147‑1                                                                                                                        AGAAGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATGCCGCT   >  4:345070/1‑147                                                                                                                         GAAGTGACGTCACGCTCGTCGTGACCGGTTGTGGGCGGATCGATCTGCTCAAAGTCACCCTTGAGAGTTTCGATCGCTACATCACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATGCCGCTG  <  7:72454/147‑1                                                                                                                                                                                                                                                                             TAATCCCTGTCGGCACAGCTTGCTGTGACCACGTATAGAAGAGTGAACACTTCGCCGCCATTGACCCCGCGCGCCTGTTTTTTTCGCTAGAAAGAACAGTGGGTTATCTTTTGTTTGATAGAag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5545442‑5545321 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTGACGTCACGCTCGTCGTGACCAGTTGTGGGCGGTTCGATCTGCTCAAAGACACCCTTGAGAGTTTCGATCGCTACAACACCGCGCCCATTCGCGAGGTATTCATCACCGAAGACTCTGGCGACGATGCTGTGCATGCCGCTG  <  NC_002947/5621245‑5621101

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.