| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 80992 | 63 (0.990) | 4 (0.070) | 4/246 | NT | 6.1% | intergenic (+49/‑85) | tsaC/PP_5425 | threonylcarbamoyl‑AMP synthase/hypothetical protein |
| ? | NC_002947 | = 81051 | 65 (1.110) | intergenic (+108/‑26) | tsaC/PP_5425 | threonylcarbamoyl‑AMP synthase/hypothetical protein | |||||
TACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/80836‑80992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAGGTCGC < NC_002947/81051‑80906 TACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGCGGGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTG > 1:81131/1‑149TACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGG < 1:52564/149‑1TACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGG < 8:150849/149‑1 TTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAG > 1:298655/1‑149 TTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAG > 4:344620/1‑149 CATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGGGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGG < 6:393151/149‑1 TGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGC < 8:230954/149‑1 TGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACAC > 2:285768/1‑149 CCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTgagggg > 1:140401/1‑142 CAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCAC < 2:81131/149‑1 ACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAG < 1:285768/149‑1 GAGCGGGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAG < 2:258480/149‑1 GGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAGGTCGC > 3:304492/1‑149 GGCATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAGGTCGC < 4:109686/149‑1 TACTTCCATGGCCAGTTGGACCTGGTGCTTGGCGGGGCGCTGGGC‑GGGCGGAAGAACCCGAGTGTGATTCGCGACCTGGCAACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/80836‑80992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggagcgggcATGCCCGCGAACACGGGCGAAGCCCGTGCCTGGCACCGAGTTGTATTCTTCGCGGGCGCGCCCGCTCCCACAGGGGCCCGAGTCCCGAGCCAGGCCTGTGGATTGGTATCAACCCGGGCGAACGACTTCGCCGGTTGCCAGGTCGC < NC_002947/81051‑80906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |