New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	353068 =	37 (0.580)	11 (0.200)	9/228	NT	29.4%	intergenic (+35/+83)	hisF/cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	353120 =	21 (0.390)					intergenic (+87/+31)	hisF/cbcV	imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein

CAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/353228‑353068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgtgccCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAG  >  NC_002947/353120‑353267                                                                                                                                                                                                                                                                                                                       CAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACTCTCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGG                                                                                                                                                                   <  4:355318/148‑1  AGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGA                                                                                                                                                                 <  7:370029/149‑1        ACGTCAGGGGGGTGGGGTTACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGC                                                                                                                                                           <  3:77974/149‑1        ACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGC                                                                                                                                                           <  7:326718/149‑1        ACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGC                                                                                                                                                           <  7:314398/149‑1               GGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGTTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCG                                                                                                                                                    >  7:123997/1‑149                GTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCAACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGC                                                                                                                                                   >  5:294178/1‑149                   ggGGGGATACTCGGGGACCCCCCGCTTTACCCCGCGCTGCTCGGCAAGAACCACGGTTGACGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACCGCGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAA                                                                                                                                                <  4:278008/147‑1                                                                                                                CACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG                                                                               >  4:258344/1‑121                                                                                                                CACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG                                                                               <  3:258344/121‑1                                                                                                                 ACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG                                                                               >  5:392804/1‑120                                                                                                                 ACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG                                                                               <  6:392804/120‑1                                                                                                                   aCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGT                                                >  4:222143/2‑149                                                                                                                     CCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTA                                              >  5:105863/1‑149                                                                                                                         TCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCT                                          >  1:370793/1‑149                                                                                                                           CCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCT                                          <  3:222143/147‑1                                                                                                                           CCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGC                                                                                                      >  5:254834/1‑87                                                                                                                                  GATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCA                                 <  2:370793/149‑1                                                                                                                                                TGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGC                        <  8:370029/144‑1                                                                                                                                                  TGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT                  <  1:174577/148‑1                                                                                                                                                  TGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT                  >  8:95869/1‑148                                                                                                                                                  TGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT                  <  4:299383/148‑1                                                                                                                                                  TGGGAGCGGGCGGGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTT                  <  6:115694/148‑1                                                                                                                                                    GGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGA                >  4:126477/1‑148                                                                                                                                                    GGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGA                >  2:349762/1‑148                                                                                                                                                      AGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAA             <  6:105863/149‑1                                                                                                                                                      AGCGGGCGTGCCAGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAA             <  4:235190/149‑1                                                                                                                                                       GCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAAC            <  6:120276/149‑1                                                                                                                                                       GCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAAC            >  4:16435/1‑149                                                                                                                                                           GCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAAT        >  3:273735/1‑149                                                                                                                                                             GTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGAGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCAGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCT      >  8:15182/1‑149                                                                                                                                                                 CCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAG  >  1:178664/1‑149                                                                                                                                                                                                                                                                                                                       CAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/353228‑353068 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgtgccCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAG  >  NC_002947/353120‑353267

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.