New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1200950	60 (0.940)	4 (0.060)	4/258	NT	6.1%	coding (147/432 nt)	xcpU	type II secretion pathway protein XcpU
	?	NC_002947	= 1200974	66 (1.070)					coding (171/432 nt)	xcpU	type II secretion pathway protein XcpU

ACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1200800‑1200950 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcATGCCGGGCCAGTGCGGCCTGGCCGCGGACCTTGACCGCCAGCCGTTGCAGGGCCTGCTCGACACTGGCCTGGCCGTTGCCAAGGCCGGCCACCGCCAGCCCGGTCATCAGCCCGGCGATAGCCAACACCACCAGCAGCTCGATCAG  <  NC_002947/1200974‑1200828                                                                                                                                                                                                                                                                                                            ACCGGTGGGCGGTCAGGGTGGCTTCATCGTGATCGTGGTGGTGGTGGTGTTGGCTATCGGCGGGCTGATGACGGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCATGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTC                                                                                                                                                        <  6:286922/148‑1   CGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGC                                                                                                                                                     >  3:157174/1‑149   CGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGC                                                                                                                                                     <  4:277229/149‑1   CGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGC                                                                                                                                                     <  5:12423/149‑1                       TTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGCATGCCGGGCCAGTGCGGCCT                                                                                                                                 >  1:1238/1‑149                                   GAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGCATGCCGGGCCAGTGCGGCCTGGCCGCGGACCT                                                                                                                     <  2:1238/149‑1                                        GCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGCATGCCGGGCCAGTGCGGCCTGGCCGCGGACCTTG                                                                                                                   <  7:279256/146‑1                                        GCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGCATGCCGGGCCAGTGCGGCCTGGCCGCGGACCTTG                                                                                                                   >  8:279256/1‑146                                                                                                                                                      GCATGCCGGGCCAGTGCGGCCTGGCCGCGGACCTTGACCGCCAGCCGTTGCAGGGCCTGCTCGACACTGGCCTGGCCGTTGCCAAGGCCGGCCACCGCCAGCCCGGTCATCAGCCCGGCGATAGCCAACACCACCAGCAGCTCGATCAG  <  2:176503/149‑1                                                                                                                                                                                                                                                                                                            ACCGGTGCGCGGTCAGCGTGGCTTCAGCCTGATCGAGCTGCTGGTGGTGTTGGCTATCGCCGGGCTGATGACCGGGCTGGCGGTGGCCGGCCTTGGCAACGGCCAGGCCAGTGTCGAGCAGGCCCTGCAACGGCTGGCGGTCAAGGTCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1200800‑1200950 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcATGCCGGGCCAGTGCGGCCTGGCCGCGGACCTTGACCGCCAGCCGTTGCAGGGCCTGCTCGACACTGGCCTGGCCGTTGCCAAGGCCGGCCACCGCCAGCCCGGTCATCAGCCCGGCGATAGCCAACACCACCAGCAGCTCGATCAG  <  NC_002947/1200974‑1200828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.