| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1462058 = | 60 (0.940) | 3 (0.050) | 3/252 | NT | 5.0% | coding (867/1458 nt) | algI | alginate O‑acetylase AlgI |
| ? | NC_002947 | 1462116 = | 56 (0.930) | coding (809/1458 nt) | algI | alginate O‑acetylase AlgI | |||||
CGACTTCAGCGGCTACAGCGACATGGCCATCGGCCTGGGCCTGATGATGGGCTTCCGCTTCATGGAAAACTTCAAGCAGCCCTATATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGGCATATCAGCCTGTCGACCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1462202‑1462058‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctgATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGGGCGCCGAGCCAGGCATCGCCCGTGGTGGGGTT > NC_002947/1462116‑1462261 CGACTTCAGCGGCTACAGCGACATGGCCATCGGCCTGGGCCTGATGATGGGCTTCCGCTTCATGGAAAACATCCAGCAGCCCTATATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGTCATATCAGACTGTCGACCTGGCTtcgag > 4:327861/1‑144 CCCTATATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGGCATATCAGCCTGTCGACCTGGCTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTG > 6:88642/1‑147 CTATATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGGCATATCAGCCTGTCGACCTGGCTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGT > 1:169088/1‑149 ATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGGCATATCAGCCTGTCGACCTGGCTGATATAGGGCTGCTTGACGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCG > 3:304397/1‑147 CTGGCTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGG < 5:318468/121‑1 CTGGCTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGG > 6:318468/1‑121 TGGCTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGGGCGCCGAGCCAGGCATCGCCCGTGGTGGG > 6:233281/1‑149 GCTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGGGCGCCGAGCCAGGCATCGCCC < 3:256428/139‑1 GCTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGGGCGCCGAGCCAGGCATCGCCC > 4:256428/1‑139 CTGATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGGGCGCCGAGCCAGGCATCGCCCGTGGTGGGGTT < 3:116805/149‑1 CGACTTCAGCGGCTACAGCGACATGGCCATCGGCCTGGGCCTGATGATGGGCTTCCGCTTCATGGAAAACTTCAAGCAGCCCTATATCAGCCAGTCGATCACCGAGTTCTGGCGGCGCTGGCATATCAGCCTGTCGACCTGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1462202‑1462058‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggctgATATAGGGCTGCTTGAAGTTTTCCATGAAGCGGAAGCCCATCATCAGGCCCAGGCCGATGGCCATGTCGCTGTAGCCGCTGAAGTCGAAGTACAGCTGTGCGGTGTAGGCCAGGGCGCCGAGCCAGGCATCGCCCGTGGTGGGGTT > NC_002947/1462116‑1462261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |